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PORTNAME= seqkit
DISTVERSIONPREFIX= v
DISTVERSION= 2.8.0
PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= yuri@FreeBSD.org
COMMENT= Cross-platform and ultrafast toolkit for FASTA/Q file manipulation
WWW= https://bioinf.shenwei.me/seqkit/
LICENSE= MIT
LICENSE_FILE= ${WRKSRC}/LICENSE
USES= go:modules
USE_GITHUB= nodefault
GH_TUPLE= golang:sys:v0.6.0:sys
GO_MODULE= github.com/shenwei356/seqkit/v2
GO_TARGET= ./${PORTNAME}
PLIST_FILES= bin/${PORTNAME}
pre-patch:
${RM} -r ${WRKSRC}/vendor/golang.org/x/sys
${LN} -s ${WRKDIR}/sys-* ${WRKSRC}/vendor/golang.org/x/sys
do-test: # from https://bioinf.shenwei.me/seqkit/benchmark/
@cd ${WRKSRC}/tests && \
${GO_WRKDIR_BIN}/seqkit stat *.fa
.include <bsd.port.mk>
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