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author | Ruslan Makhmatkhanov <rm@FreeBSD.org> | 2015-09-25 18:33:18 +0000 |
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committer | Ruslan Makhmatkhanov <rm@FreeBSD.org> | 2015-09-25 18:33:18 +0000 |
commit | 4d7b4d8d9092c68ca5af540041c9c36fbc16d817 (patch) | |
tree | dd49529c4ae722e1619fec4011b0b7d7ab8e5859 | |
parent | 036ac0906d6154ff5cc1e0459cae8cea8a4fbafc (diff) | |
download | ports-4d7b4d8d9092c68ca5af540041c9c36fbc16d817.tar.gz ports-4d7b4d8d9092c68ca5af540041c9c36fbc16d817.zip |
Notes
-rw-r--r-- | biology/Makefile | 1 | ||||
-rw-r--r-- | biology/fastx-toolkit/Makefile | 27 | ||||
-rw-r--r-- | biology/fastx-toolkit/distinfo | 2 | ||||
-rw-r--r-- | biology/fastx-toolkit/pkg-descr | 4 | ||||
-rw-r--r-- | biology/fastx-toolkit/pkg-plist | 23 |
5 files changed, 57 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile index 3d9eb0bdbc59..77e6807b8b87 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -20,6 +20,7 @@ SUBDIR += fasta SUBDIR += fasta3 SUBDIR += fastdnaml + SUBDIR += fastx-toolkit SUBDIR += fluctuate SUBDIR += garlic SUBDIR += gff2ps diff --git a/biology/fastx-toolkit/Makefile b/biology/fastx-toolkit/Makefile new file mode 100644 index 000000000000..b93aa5055d91 --- /dev/null +++ b/biology/fastx-toolkit/Makefile @@ -0,0 +1,27 @@ +# Created by: Jason Bacon <jwbacon@tds.net> +# $FreeBSD$ + +PORTNAME= fastx_toolkit +PORTVERSION= 0.0.14 +CATEGORIES= biology + +MAINTAINER= jwbacon@tds.net +COMMENT= CLI tools for Short-Reads FASTA/FASTQ files preprocessing + +LICENSE= AGPLv3 + +LIB_DEPENDS= libgtextutils.so:${PORTSDIR}/biology/libgtextutils + +USES= autoreconf libtool perl5 pkgconfig shebangfix tar:bzip2 +USE_PERL5= run +SHEBANG_FILES= scripts/*.pl + +USE_GITHUB= yes +GH_ACCOUNT= agordon +GH_PROJECT= ${PORTNAME} + +GNU_CONFIGURE= yes + +CONFIGURE_ENV+= PKG_CONFIG_PATH=${PREFIX}/lib/pkgconfig + +.include <bsd.port.mk> diff --git a/biology/fastx-toolkit/distinfo b/biology/fastx-toolkit/distinfo new file mode 100644 index 000000000000..9adae3e0e9bf --- /dev/null +++ b/biology/fastx-toolkit/distinfo @@ -0,0 +1,2 @@ +SHA256 (agordon-fastx_toolkit-0.0.14_GH0.tar.bz2) = af4f9fe59f8c91bdd2d735bdac1fd89f0549b2bc759313fe3b86948056aad1aa +SIZE (agordon-fastx_toolkit-0.0.14_GH0.tar.bz2) = 259576 diff --git a/biology/fastx-toolkit/pkg-descr b/biology/fastx-toolkit/pkg-descr new file mode 100644 index 000000000000..b5adb7ef6f36 --- /dev/null +++ b/biology/fastx-toolkit/pkg-descr @@ -0,0 +1,4 @@ +The FASTX-Toolkit is a collection of command line tools for Short-Reads +FASTA/FASTQ files preprocessing. + +WWW: http://hannonlab.cshl.edu/fastx_toolkit/ diff --git a/biology/fastx-toolkit/pkg-plist b/biology/fastx-toolkit/pkg-plist new file mode 100644 index 000000000000..828bb7ce8d59 --- /dev/null +++ b/biology/fastx-toolkit/pkg-plist @@ -0,0 +1,23 @@ +bin/fasta_clipping_histogram.pl +bin/fasta_formatter +bin/fasta_nucleotide_changer +bin/fastq_masker +bin/fastq_quality_boxplot_graph.sh +bin/fastq_quality_converter +bin/fastq_quality_filter +bin/fastq_quality_trimmer +bin/fastq_to_fasta +bin/fastx_artifacts_filter +bin/fastx_barcode_splitter.pl +bin/fastx_clipper +bin/fastx_collapser +bin/fastx_nucleotide_distribution_graph.sh +bin/fastx_nucleotide_distribution_line_graph.sh +bin/fastx_quality_stats +bin/fastx_renamer +bin/fastx_reverse_complement +bin/fastx_trimmer +bin/fastx_uncollapser +share/aclocal/ax_c_long_long.m4 +share/aclocal/ax_cxx_compile_stdcxx_11.m4 +share/aclocal/ax_cxx_header_stdcxx_tr1.m4 |