diff options
| author | Thierry Thomas <thierry@FreeBSD.org> | 2005-05-06 15:19:35 +0000 |
|---|---|---|
| committer | Thierry Thomas <thierry@FreeBSD.org> | 2005-05-06 15:19:35 +0000 |
| commit | 99a43cd0a639e7903a8d04d51de48ad6fc6d841a (patch) | |
| tree | c7f654e56d2798c25996e8d370abc109f5d4272a | |
| parent | 2c163c685d820f9a3765c1f915a07d627663240e (diff) | |
| download | ports-99a43cd0a639e7903a8d04d51de48ad6fc6d841a.tar.gz ports-99a43cd0a639e7903a8d04d51de48ad6fc6d841a.zip | |
Notes
| -rw-r--r-- | science/vmd/Makefile | 34 | ||||
| -rw-r--r-- | science/vmd/distinfo | 8 | ||||
| -rw-r--r-- | science/vmd/files/patch-Make-arch | 18 | ||||
| -rw-r--r-- | science/vmd/files/patch-Makefile | 4 | ||||
| -rw-r--r-- | science/vmd/files/patch-configure | 14 | ||||
| -rw-r--r-- | science/vmd/files/patch-lib_tachyon_unix_Make-arch | 11 | ||||
| -rw-r--r-- | science/vmd/files/patch-stride_Makefile | 10 | ||||
| -rw-r--r-- | science/vmd/files/patch-surf_Makefile | 11 | ||||
| -rw-r--r-- | science/vmd/pkg-plist | 505 |
9 files changed, 354 insertions, 261 deletions
diff --git a/science/vmd/Makefile b/science/vmd/Makefile index 87d95062236a..00d250fc0f5c 100644 --- a/science/vmd/Makefile +++ b/science/vmd/Makefile @@ -6,10 +6,10 @@ # PORTNAME= vmd -PORTVERSION= 1.8.2 -PORTREVISION= 2 +PORTVERSION= 1.8.3 +PORTREVISION= 0 CATEGORIES= science graphics python tcl84 tk84 -MASTER_SITES= http://jedi.ks.uiuc.edu/~johns/raytracer/files/0.96/ \ +MASTER_SITES= http://jedi.ks.uiuc.edu/~johns/raytracer/files/0.97/ \ ftp://ftp.ebi.ac.uk/pub/software/unix/stride/src/ DISTFILES= ${VMD_DIST} ${TACHYON_DIST} ${STRIDE_DIST} @@ -33,7 +33,7 @@ NO_CDROM= "License has restrictions" RESTRICTED= "License has restrictions" VMD_DIST= ${PORTNAME}-${PORTVERSION}.src.tar.gz -TACHYON_DIST= tachyon-0.96.tar.gz +TACHYON_DIST= tachyon-0.97.tar.gz STRIDE_DIST= stride.tar.gz .include <bsd.port.pre.mk> @@ -63,10 +63,10 @@ ${VMD_DIST}. Please place this file in ${DISTDIR}.\n do-extract: ${MKDIR} ${WRKDIR} - cd ${WRKDIR} && ${TAR} xfz ${DISTDIR}/${VMD_DIST} - cd ${WRKSRC}/lib/surf && ${TAR} xfz surf.tar.Z - cd ${WRKSRC}/lib && ${TAR} xfz ${DISTDIR}/${TACHYON_DIST} - cd ${WRKSRC}/lib/stride && ${TAR} xfz ${DISTDIR}/${STRIDE_DIST} + ${TAR} xfz ${DISTDIR}/${VMD_DIST} -C ${WRKDIR} + ${TAR} xfz ${WRKSRC}/lib/surf/surf.tar.Z -C ${WRKSRC}/lib/surf + ${TAR} xfz ${DISTDIR}/${TACHYON_DIST} -C ${WRKSRC}/lib + ${TAR} xfz ${DISTDIR}/${STRIDE_DIST} -C ${WRKSRC}/lib/stride post-patch: ${REINPLACE_CMD} "s/-lpthread/${PTHREAD_LIBS}/" ${WRKSRC}/configure @@ -74,17 +74,19 @@ post-patch: ${REINPLACE_CMD} "s/-ltcl8.4/-ltcl84/" ${WRKSRC}/configure ${REINPLACE_CMD} "s%\$$python_dir/lib_\$$config_arch%${PREFIX}%" ${WRKSRC}/configure ${REINPLACE_CMD} "s/python2.2/${PYTHON_VERSION}/" ${WRKSRC}/configure + ${REINPLACE_CMD} "s/.SILENT:/#.SILENT:/" ${WRKDIR}/plugins/Makefile + ${REINPLACE_CMD} "s/.SILENT:/#.SILENT:/" ${WRKDIR}/plugins/*/Makefile do-build: - cd ${WRKSRC}/lib/tachyon/unix && ${SETENV} ${MAKE_ENV} ${GMAKE} bsd && ${MV} ../compile/bsd/tachyon ../tachyon_${VMD_ARCH} - cd ${WRKDIR}/plugins && ${SETENV} ${MAKE_ENV} PLUGINDIR=${WRKSRC}/plugins ${GMAKE} ${VMD_ARCH} distrib - cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} TCL_INCLUDE_DIR=${PREFIX}/include/tcl8.4 TK_INCLUDE_DIR=${PREFIX}/include/tk8.4 ${GMAKE} ${VMD_TARGET} - cd ${WRKSRC}/src && ${SETENV} ${MAKE_ENV} ${GMAKE} all - cd ${WRKSRC}/lib/surf && ${SETENV} ${MAKE_ENV} ${GMAKE} depend && ${SETENV} ${MAKE_ENV} ${GMAKE} surf && ${MV} surf surf_${VMD_ARCH} - cd ${WRKSRC}/lib/stride && ${SETENV} ${MAKE_ENV} ${GMAKE} && ${MV} stride stride_${VMD_ARCH} + ${SETENV} ${MAKE_ENV} ${GMAKE} bsd -C ${WRKSRC}/lib/tachyon/unix && ${MV} ${WRKSRC}/lib/tachyon/compile/bsd/tachyon ${WRKSRC}/lib/tachyon/tachyon_${VMD_ARCH} + ${SETENV} ${MAKE_ENV} PLUGINDIR=${WRKSRC}/plugins ${GMAKE} ${VMD_ARCH} distrib -C ${WRKDIR}/plugins + ${SETENV} ${MAKE_ENV} TCL_INCLUDE_DIR=${PREFIX}/include/tcl8.4 TK_INCLUDE_DIR=${PREFIX}/include/tk8.4 ${GMAKE} ${VMD_TARGET} -C ${WRKSRC} + ${SETENV} ${MAKE_ENV} ${GMAKE} all -C ${WRKSRC}/src + ${SETENV} ${MAKE_ENV} ${GMAKE} depend -C ${WRKSRC}/lib/surf && ${SETENV} ${MAKE_ENV} ${GMAKE} surf -C ${WRKSRC}/lib/surf && ${MV} ${WRKSRC}/lib/surf/surf ${WRKSRC}/lib/surf/surf_${VMD_ARCH} + ${SETENV} ${MAKE_ENV} ${GMAKE} -C ${WRKSRC}/lib/stride && ${MV} ${WRKSRC}/lib/stride/stride ${WRKSRC}/lib/stride/stride_${VMD_ARCH} do-install: - cd ${WRKSRC}/src && ${SETENV} ${MAKE_ENV} ${GMAKE} install -# cd ${WRKSRC}/lib/surf && ${INSTALL_PROGRAM} surf_${VMD_ARCH} ${PREFIX}/lib/vmd + ${SETENV} ${MAKE_ENV} ${GMAKE} -C ${WRKSRC}/src install + @${CHOWN} -R ${SHAREOWN}:${SHAREGRP} ${PREFIX}/lib/vmd .include <bsd.port.post.mk> diff --git a/science/vmd/distinfo b/science/vmd/distinfo index 24df7f7013f8..d98d34e7fce8 100644 --- a/science/vmd/distinfo +++ b/science/vmd/distinfo @@ -1,6 +1,6 @@ -MD5 (vmd-1.8.2.src.tar.gz) = 8ad9cb90d954740f3b54be585526698d -SIZE (vmd-1.8.2.src.tar.gz) = 7192878 -MD5 (tachyon-0.96.tar.gz) = db695196231a304b8102c1d6a0f6f6f2 -SIZE (tachyon-0.96.tar.gz) = 2419955 +MD5 (vmd-1.8.3.src.tar.gz) = 8fb3fa55a54bcc3e41dbbd53c1c2cc59 +SIZE (vmd-1.8.3.src.tar.gz) = 8590337 +MD5 (tachyon-0.97.tar.gz) = 198953aea283a7158eef2ee079e909f6 +SIZE (tachyon-0.97.tar.gz) = 2485223 MD5 (stride.tar.gz) = bdef3a3e1af8cbdf8fbfefacfa9a929f SIZE (stride.tar.gz) = 56441 diff --git a/science/vmd/files/patch-Make-arch b/science/vmd/files/patch-Make-arch index b2e6ed661726..f476206f9363 100644 --- a/science/vmd/files/patch-Make-arch +++ b/science/vmd/files/patch-Make-arch @@ -1,5 +1,5 @@ ---- ../plugins/Make-arch.orig Fri Nov 14 07:50:25 2003 -+++ ../plugins/Make-arch Fri Jan 21 19:30:53 2005 +--- Make-arch.orig Mon Feb 7 13:09:55 2005 ++++ ../plugins/Make-arch Fri Mar 25 16:54:01 2005 @@ -9,6 +9,7 @@ @echo "--------------------------------------" @echo " AIX4" @@ -8,10 +8,14 @@ @echo " HPUX11" @echo " IRIX6" @echo " IRIX6_64" -@@ -142,6 +143,20 @@ +@@ -142,8 +143,22 @@ + "LOPTO = -o " \ + "CC = gcc" \ "CXX = g++" \ - "CCFLAGS = -O2 -Wall -ansi -I/usr/local/include/tcl8.4" \ - "CXXFLAGS = -O2 -Wall" \ +- "CCFLAGS = -O2 -Wall -I/usr/local/include/tcl8.4" \ +- "CXXFLAGS = -O2 -Wall" \ ++ "CCFLAGS = ${CFLAGS} -O2 -Wall -I/usr/local/include/tcl8.4" \ ++ "CXXFLAGS = ${CFLAGS} -O2 -Wall" \ + "TCLLDFLAGS = -L/usr/local/lib -ltcl84" \ + "NM = nm -p" \ + "RANLIB = touch" \ @@ -24,8 +28,8 @@ + "LOPTO = -fPIC -m64 -o " \ + "CC = gcc" \ + "CXX = g++" \ -+ "CCFLAGS = -m64 -O2 -Wall -ansi -I/usr/local/include/tcl8.4" \ -+ "CXXFLAGS = -m64 -O2 -Wall" \ ++ "CCFLAGS = ${CFLAGS} -m64 -O2 -Wall -I/usr/local/include/tcl8.4" \ ++ "CXXFLAGS = ${CFLAGS} -m64 -O2 -Wall" \ "TCLLDFLAGS = -L/usr/local/lib -ltcl84" \ "NM = nm -p" \ "RANLIB = touch" \ diff --git a/science/vmd/files/patch-Makefile b/science/vmd/files/patch-Makefile index c8bd108b6b52..59ad76f3cc4e 100644 --- a/science/vmd/files/patch-Makefile +++ b/science/vmd/files/patch-Makefile @@ -5,12 +5,12 @@ ## FreeBSD builds freebsd.mesa: - ./configure FREEBSD MESA FLTK TK TCL IMD VRPN PYTHON PTHREADS LIBTACHYON NUMPY SILENT -+ ./configure FREEBSD MESA FLTK TK TCL IMD PYTHON PTHREADS LIBTACHYON NUMPY SILENT ++ ./configure FREEBSD MESA FLTK TK TCL IMD PYTHON PTHREADS LIBTACHYON NUMPY # FreeBSD doesn't have hardware good accelleration support freebsd.opengl: - ./configure FREEBSD OPENGL FLTK TK IMD VRPN SILENT SPACEBALL TCL PTHREADS ACTC LIBTACHYON PYTHON NUMPY -+ ./configure FREEBSD OPENGL FLTK TK IMD SILENT TCL PTHREADS LIBTACHYON PYTHON NUMPY ++ ./configure FREEBSD OPENGL FLTK TK IMD TCL PTHREADS LIBTACHYON PYTHON NUMPY + +freebsd.amd64.opengl: + ./configure FREEBSDAMD64 OPENGL FLTK TK IMD SILENT TCL PTHREADS LIBTACHYON PYTHON NUMPY diff --git a/science/vmd/files/patch-configure b/science/vmd/files/patch-configure index 252ed252c42f..72a717480095 100644 --- a/science/vmd/files/patch-configure +++ b/science/vmd/files/patch-configure @@ -109,3 +109,17 @@ if ($config_python) { # this is to make python happy +@@ -2052,11 +2114,11 @@ + + # compiler and compiler directives + CC = $arch_cc +-CFLAGS = $arch_copts -DARCH_$config_arch \$(DEFINES) \$(INCDIRS) + COMPILERC = $arch_compilerc + RCFLAGS = $arch_rcflags + CCPP = $arch_ccpp +-CPPFLAGS = $arch_opt_flag $arch_cppopts -DARCH_$config_arch \$(DEFINES) \$(INCDIRS) ++CPPFLAGS = \${CXXFLAGS} $arch_opt_flag $arch_cppopts -DARCH_$config_arch \$(DEFINES) \$(INCDIRS) ++CFLAGS += $arch_copts -DARCH_$config_arch \$(DEFINES) \$(INCDIRS) + + DEPEND = $arch_depend_flag + DEPENDFILE = Makedata.depend diff --git a/science/vmd/files/patch-lib_tachyon_unix_Make-arch b/science/vmd/files/patch-lib_tachyon_unix_Make-arch new file mode 100644 index 000000000000..2d67afb4b77c --- /dev/null +++ b/science/vmd/files/patch-lib_tachyon_unix_Make-arch @@ -0,0 +1,11 @@ +--- Make-arch-orig Fri Mar 25 14:34:38 2005 ++++ lib/tachyon/unix/Make-arch Fri Mar 25 14:34:50 2005 +@@ -859,7 +859,7 @@ + $(MAKE) all \ + "ARCH = bsd" \ + "CC = gcc" \ +- "CFLAGS = -O6 -fomit-frame-pointer -ffast-math -DBsd $(MISCFLAGS)" \ ++ "CFLAGS += -O6 -fomit-frame-pointer -ffast-math -DBsd $(MISCFLAGS)" \ + "AR = ar" \ + "ARFLAGS = r" \ + "STRIP = strip" \ diff --git a/science/vmd/files/patch-stride_Makefile b/science/vmd/files/patch-stride_Makefile new file mode 100644 index 000000000000..e3fab512fd07 --- /dev/null +++ b/science/vmd/files/patch-stride_Makefile @@ -0,0 +1,10 @@ +--- lib/stride/Makefile-orig Fri Mar 25 17:51:11 2005 ++++ lib/stride/Makefile Fri Mar 25 17:49:22 2005 +@@ -1,6 +1,6 @@ + #CC = gcc -O2 # ->> for DJGPP compiler under DOS and for SunOS; also suitable for other machines + +-CC = cc -O2 ++CC = cc ${CFLAGS} -O2 + FLAGS = -lm -o + + SOURCE = stride.c splitstr.c rdpdb.c initchn.c geometry.c thr2one.c one2thr.c filename.c tolostr.c strutil.c place_h.c hbenergy.c memory.c helix.c sheet.c rdmap.c phipsi.c command.c molscr.c die.c hydrbond.c mergepat.c fillasn.c escape.c p_jrnl.c p_rem.c p_atom.c p_helix.c p_sheet.c p_turn.c p_ssbond.c p_expdta.c p_model.c p_compnd.c report.c nsc.c area.c ssbond.c chk_res.c chk_atom.c turn.c pdbasn.c dssp.c outseq.c chkchain.c elem.c measure.c asngener.c p_endmdl.c stred.c diff --git a/science/vmd/files/patch-surf_Makefile b/science/vmd/files/patch-surf_Makefile new file mode 100644 index 000000000000..f8136f812ce7 --- /dev/null +++ b/science/vmd/files/patch-surf_Makefile @@ -0,0 +1,11 @@ +--- lib/surf/Makefile.orig Fri Mar 25 17:52:40 2005 ++++ lib/surf/Makefile Fri Mar 25 17:50:20 2005 +@@ -6,7 +6,7 @@ + LINCLUDE = -lm + OPT_CFLAGS = -O2 $(FLAGS) $(INCLUDE) + #CFLAGS = -g $(FLAGS) $(INCLUDE) +-CFLAGS = -O2 $(FLAGS) $(INCLUDE) ++CFLAGS += -O2 $(FLAGS) $(INCLUDE) + + # These are the user object files in the application + SRCS = surf.c io.c compute.c dual.c utils.c lp.c chull.c tessel_cases.c \ diff --git a/science/vmd/pkg-plist b/science/vmd/pkg-plist index 6018c05ac527..b78504ff706c 100644 --- a/science/vmd/pkg-plist +++ b/science/vmd/pkg-plist @@ -1,40 +1,164 @@ bin/vmd -lib/vmd/doc/ug.pdf lib/vmd/Announcement -lib/vmd/README lib/vmd/LICENSE -lib/vmd/vmd_%%VMD_ARCH%% -lib/vmd/surf_%%VMD_ARCH%% -lib/vmd/stride_%%VMD_ARCH%% -lib/vmd/tachyon_%%VMD_ARCH%% -lib/vmd/scripts/CVS/Root -lib/vmd/scripts/CVS/Repository +lib/vmd/README +lib/vmd/.vmdrc +lib/vmd/.vmdsensors +lib/vmd/doc/ug.pdf +lib/vmd/plugins/%%VMD_ARCH%%/bin/catdcd4.0/catdcd +lib/vmd/plugins/%%VMD_ARCH%%/molfile/avsplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/babelplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/binposplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/brixplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/carplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/ccp4plugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/corplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/cpmdplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/crdplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/cubeplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/dcdplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/dlpolyplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/dsn6plugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/dxplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/edmplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/fs4plugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/gamessplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/graspplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/grdplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/gridplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/gromacsplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/lammpsplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/libmolfile_plugin.a +lib/vmd/plugins/%%VMD_ARCH%%/molfile/libmolfile_plugin.h +lib/vmd/plugins/%%VMD_ARCH%%/molfile/mapplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/mdfplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/mol2plugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/moldenplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/namdbinplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/parm7plugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/parmplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/pdbplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/phiplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/pltplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/pqrplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/psfplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/raster3dplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/rst7plugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/stlplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/tinkerplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/webpdbplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/xsfplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/molfile/xyzplugin.so +lib/vmd/plugins/%%VMD_ARCH%%/tcl/pmepot1.0/libpmepot.so +lib/vmd/plugins/%%VMD_ARCH%%/tcl/pmepot1.0/pkgIndex.tcl +lib/vmd/plugins/%%VMD_ARCH%%/tcl/pmepot1.0/pmepot.tcl +lib/vmd/plugins/%%VMD_ARCH%%/tcl/pmepot1.0/pmepot_gui.tcl +lib/vmd/plugins/%%VMD_ARCH%%/tcl/psfgen1.3/libpsfgen.so +lib/vmd/plugins/%%VMD_ARCH%%/tcl/psfgen1.3/pkgIndex.tcl +lib/vmd/plugins/%%VMD_ARCH%%/tcl/psfgen1.3/ug.pdf +lib/vmd/plugins/include/molfile_plugin.h +lib/vmd/plugins/include/vmdplugin.h +lib/vmd/plugins/noarch/tcl/apbsrun1.0/apbsrun.tcl +lib/vmd/plugins/noarch/tcl/apbsrun1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/apbsrun1.0/radii.dat +lib/vmd/plugins/noarch/tcl/autoimd1.4/autoimd-api.tcl +lib/vmd/plugins/noarch/tcl/autoimd1.4/autoimd-gui.tcl +lib/vmd/plugins/noarch/tcl/autoimd1.4/autoimd-settings.tcl +lib/vmd/plugins/noarch/tcl/autoimd1.4/autoimd-template.namd +lib/vmd/plugins/noarch/tcl/autoimd1.4/autoimd.tcl +lib/vmd/plugins/noarch/tcl/autoimd1.4/namdrun.tcl +lib/vmd/plugins/noarch/tcl/autoimd1.4/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/autoimd1.4/ug.pdf +lib/vmd/plugins/noarch/tcl/autoionize1.1/autoionize.tcl +lib/vmd/plugins/noarch/tcl/autoionize1.1/ions.top +lib/vmd/plugins/noarch/tcl/autoionize1.1/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/cliptool1.0/cliptool.tcl +lib/vmd/plugins/noarch/tcl/cliptool1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/contactmap1.1/contactmap.tcl +lib/vmd/plugins/noarch/tcl/contactmap1.1/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/exectool1.0/exectool.tcl +lib/vmd/plugins/noarch/tcl/exectool1.0/jobmanager.tcl +lib/vmd/plugins/noarch/tcl/exectool1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/imdmenu1.0/imdmenu.tcl +lib/vmd/plugins/noarch/tcl/imdmenu1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/membrane1.0/membrane.tcl +lib/vmd/plugins/noarch/tcl/membrane1.0/pkgIndex.tcl +lib/vmd/plugins/noarch/tcl/membrane1.0/popc_box.pdb +lib/vmd/plugins/noarch/tcl/membrane1.0/popc_box.psf +lib/vmd/plugins/noarch/tcl/membrane1.0/pope_box.pdb +lib/vmd/plugins/noarch/tcl/membrane1.0/pope_box.psf +lib/vmd/plugins/noarch/tcl/membrane1.0/top_all27_prot_lipid.inp +lib/vmd/plugins/noarch/tcl/navigate1.0/navigate.tcl +lib/vmd/plugins/noarch/tcl/navigate1.0/pkgIndex.tcl 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+lib/vmd/scripts/tk8.4/msgs/el.msg +lib/vmd/scripts/tk8.4/msgs/en.msg +lib/vmd/scripts/tk8.4/msgs/en_gb.msg +lib/vmd/scripts/tk8.4/msgs/es.msg +lib/vmd/scripts/tk8.4/msgs/fr.msg +lib/vmd/scripts/tk8.4/msgs/it.msg +lib/vmd/scripts/tk8.4/msgs/nl.msg +lib/vmd/scripts/tk8.4/msgs/ru.msg +lib/vmd/scripts/tk8.4/obsolete.tcl +lib/vmd/scripts/tk8.4/optMenu.tcl +lib/vmd/scripts/tk8.4/palette.tcl +lib/vmd/scripts/tk8.4/panedwindow.tcl +lib/vmd/scripts/tk8.4/prolog.ps +lib/vmd/scripts/tk8.4/safetk.tcl +lib/vmd/scripts/tk8.4/scale.tcl +lib/vmd/scripts/tk8.4/scrlbar.tcl +lib/vmd/scripts/tk8.4/spinbox.tcl +lib/vmd/scripts/tk8.4/tclIndex +lib/vmd/scripts/tk8.4/tearoff.tcl +lib/vmd/scripts/tk8.4/text.tcl +lib/vmd/scripts/tk8.4/tk.tcl +lib/vmd/scripts/tk8.4/tkAppInit.c +lib/vmd/scripts/tk8.4/tkfbox.tcl +lib/vmd/scripts/tk8.4/unsupported.tcl +lib/vmd/scripts/tk8.4/xmfbox.tcl +lib/vmd/scripts/vmd/CVS/Entries +lib/vmd/scripts/vmd/CVS/Repository +lib/vmd/scripts/vmd/CVS/Root +lib/vmd/scripts/vmd/README.chemical2vmd +lib/vmd/scripts/vmd/atomselect.tcl +lib/vmd/scripts/vmd/atomselmacros.tcl +lib/vmd/scripts/vmd/biocore.tcl +lib/vmd/scripts/vmd/chemical2vmd +lib/vmd/scripts/vmd/colordefs.dat +lib/vmd/scripts/vmd/draw.tcl +lib/vmd/scripts/vmd/graphlabels.tcl +lib/vmd/scripts/vmd/hotkeys.tcl +lib/vmd/scripts/vmd/logfile.tcl +lib/vmd/scripts/vmd/openURL.tcl +lib/vmd/scripts/vmd/restypes.dat +lib/vmd/scripts/vmd/save_state.tcl +lib/vmd/scripts/vmd/tclIndex +lib/vmd/scripts/vmd/vectors.tcl +lib/vmd/scripts/vmd/vmdinit.tcl +lib/vmd/scripts/vmd/www.tcl +lib/vmd/shaders/CVS/Entries +lib/vmd/shaders/CVS/Repository +lib/vmd/shaders/CVS/Root +lib/vmd/shaders/vmd.frag +lib/vmd/shaders/vmd.vert +lib/vmd/shaders/vmdsphere.frag +lib/vmd/shaders/vmdsphere.vert +lib/vmd/stride_%%VMD_ARCH%% +lib/vmd/surf_%%VMD_ARCH%% +lib/vmd/tachyon_%%VMD_ARCH%% +lib/vmd/vmd_%%VMD_ARCH%% +@dirrm lib/vmd/shaders/CVS +@dirrm lib/vmd/shaders @dirrm lib/vmd/scripts/vmd/CVS @dirrm lib/vmd/scripts/vmd @dirrm lib/vmd/scripts/tk8.4/msgs @@ -393,24 +429,29 @@ lib/vmd/scripts/tk8.0 @dirrm lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3/CVS @dirrm lib/vmd/plugins/noarch/tcl/vmdtkcon1.0/tkcon-2.3 @dirrm lib/vmd/plugins/noarch/tcl/vmdtkcon1.0 -@dirrm lib/vmd/plugins/noarch/tcl/vmdmovie1.1 +@dirrm lib/vmd/plugins/noarch/tcl/vmdmovie1.2 +@dirrm lib/vmd/plugins/noarch/tcl/viewmaster2.1 @dirrm lib/vmd/plugins/noarch/tcl/timeline1.0 @dirrm lib/vmd/plugins/noarch/tcl/solvate1.2 @dirrm lib/vmd/plugins/noarch/tcl/rmsd1.0 @dirrm lib/vmd/plugins/noarch/tcl/ramaplot1.0 @dirrm lib/vmd/plugins/noarch/tcl/pdbtool1.0 -@dirrm lib/vmd/plugins/noarch/tcl/namdrun0.1 +@dirrm lib/vmd/plugins/noarch/tcl/navigate1.0 @dirrm lib/vmd/plugins/noarch/tcl/membrane1.0 -@dirrm lib/vmd/plugins/noarch/tcl/jmvexport1.0 @dirrm lib/vmd/plugins/noarch/tcl/imdmenu1.0 -@dirrm lib/vmd/plugins/noarch/tcl/contactmap1.0 -@dirrm lib/vmd/plugins/noarch/tcl/autoionize1.0 -@dirrm lib/vmd/plugins/noarch/tcl/autoimd1.3 -@dirrm lib/vmd/plugins/noarch/tcl/aligntool1.0 +@dirrm lib/vmd/plugins/noarch/tcl/exectool1.0 +@dirrm lib/vmd/plugins/noarch/tcl/contactmap1.1 +@dirrm lib/vmd/plugins/noarch/tcl/cliptool1.0 +@dirrm lib/vmd/plugins/noarch/tcl/autoionize1.1 +@dirrm lib/vmd/plugins/noarch/tcl/autoimd1.4 +@dirrm lib/vmd/plugins/noarch/tcl/apbsrun1.0 @dirrm lib/vmd/plugins/noarch/tcl @dirrm lib/vmd/plugins/noarch @dirrm lib/vmd/plugins/include +@dirrm lib/vmd/plugins/%%VMD_ARCH%%/bin/catdcd4.0 +@dirrm lib/vmd/plugins/%%VMD_ARCH%%/bin @dirrm lib/vmd/plugins/%%VMD_ARCH%%/tcl/psfgen1.3 +@dirrm lib/vmd/plugins/%%VMD_ARCH%%/tcl/pmepot1.0 @dirrm lib/vmd/plugins/%%VMD_ARCH%%/tcl @dirrm lib/vmd/plugins/%%VMD_ARCH%%/molfile @dirrm lib/vmd/plugins/%%VMD_ARCH%% |