4 files changed, 22 insertions, 0 deletions

diff --git a/biology/Makefile b/biology/Makefile
index a5d67b95304e..cca7466654dc 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -65,6 +65,7 @@
     SUBDIR += p5-bioperl-run-devel
     SUBDIR += paml
     SUBDIR += phd2fasta
+    SUBDIR += phrap
     SUBDIR += phylip
     SUBDIR += platon
     SUBDIR += povchem
diff --git a/biology/phd2fasta/distinfo b/biology/phd2fasta/distinfo
new file mode 100644
index 000000000000..58ba11c427ee
--- /dev/null
+++ b/biology/phd2fasta/distinfo
@@ -0,0 +1,3 @@
+MD5 (phd2fasta-acd-dist.tar.Z) = d72a5b20925d45ca87b353e20f3c673c
+SHA256 (phd2fasta-acd-dist.tar.Z) = e73e190a9721e8f459e8589bd448114cf670054240439dec2c8cde8d9f97c6a0
+SIZE (phd2fasta-acd-dist.tar.Z) = 58431
diff --git a/biology/phd2fasta/files/patch-Makefile b/biology/phd2fasta/files/patch-Makefile
new file mode 100644
index 000000000000..3dd2d7f8d370
--- /dev/null
+++ b/biology/phd2fasta/files/patch-Makefile
@@ -0,0 +1,10 @@
+--- Makefile.orig	2002-08-09 05:30:48.000000000 +0900
++++ Makefile	2007-12-06 19:02:31.000000000 +0900
+@@ -1,5 +1,5 @@
+-CC=cc
+-CFLAGS=-O -w
++CC?=cc
++CFLAGS+=-w
+ CLIB=-lm
+ 
+ OBJ= phd2fasta.o \
diff --git a/biology/phd2fasta/pkg-descr b/biology/phd2fasta/pkg-descr
new file mode 100644
index 000000000000..e965d0987bd0
--- /dev/null
+++ b/biology/phd2fasta/pkg-descr
@@ -0,0 +1,8 @@
+Phred and consed write sequence and quality value information in
+'phd' output files. A phd file contains information in a header,
+the called bases, the base quality values, and the base call trace
+locations.  Phd2fasta reads phd files and writes sequence and quality
+value FASTA files, which phrap and cross_match need as input.
+(Consed needs phd files in order to obtain the base call locations.)
+
+WWW: http://www.phrap.org/phredphrapconsed.html