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authorMaho Nakata <maho@FreeBSD.org>2003-12-28 08:02:14 +0000
committerMaho Nakata <maho@FreeBSD.org>2003-12-28 08:02:14 +0000
commita7e3bc1c4c185749026b333ba587540d76e6bb10 (patch)
tree58def47d487f565c5b4b1a093ac4ef642736bd75
parent88cab673f61cf0f18e3eccdd37d2993e6367b0c2 (diff)
downloadports-a7e3bc1c4c185749026b333ba587540d76e6bb10.tar.gz
ports-a7e3bc1c4c185749026b333ba587540d76e6bb10.zip
Notes
-rw-r--r--biology/garlic/Makefile6
-rw-r--r--biology/garlic/distinfo4
-rw-r--r--biology/garlic/pkg-plist2
3 files changed, 8 insertions, 4 deletions
diff --git a/biology/garlic/Makefile b/biology/garlic/Makefile
index 1678a0548e9f..eb11afc4ec65 100644
--- a/biology/garlic/Makefile
+++ b/biology/garlic/Makefile
@@ -7,6 +7,7 @@
PORTNAME= garlic
PORTVERSION= 1.4
+PORTREVISION= 1
CATEGORIES= biology
MASTER_SITES= http://garlic.mefos.hr/sources/garlic-${PORTVERSION}/
DISTFILES= ${DISTNAME}${EXTRACT_SUFX}
@@ -26,10 +27,11 @@ ALL_TARGET= # empty
.if defined(WITH_OPTIMIZED_FLAGS)
CFLAGS+= -O3 -ffast-math -finline-functions -fomit-frame-pointer -funroll-loops -fexpensive-optimizations -malign-double
.if (${MACHINE_ARCH} == "i386")
-CFLAGS+= -mcpu=i686 -march=i686 -mfancy-math-387
+CFLAGS+= -mfancy-math-387 -mpreferred-stack-boundary=3
.endif # i386
.endif
+
post-patch:
@${REINPLACE_CMD} -e 's|%%X11BASE%%|${X11BASE}|g ; \
s|%%LOCALBASE%%|${LOCALBASE}|g ;\
@@ -50,7 +52,7 @@ do-install:
@${INSTALL_DATA} ${WRKSRC}/*.script ${EXAMPLESDIR}
@${MKDIR} ${DOCSDIR}
@${MKDIR} ${WRKDIR}/doc
- @cd ${WRKDIR}/doc ; ${TAR} xvfz ${DISTDIR}/${DISTNAME}-doc${EXTRACT_SUFX}
+ @(cd ${WRKDIR}/doc ; ${TAR} xfz ${DISTDIR}/${DISTNAME}-doc${EXTRACT_SUFX} )
@${TAR} -C ${WRKDIR}/doc/${DISTNAME} -cf - . | \
${TAR} -C ${DOCSDIR} -xf -
@${FIND} ${DOCSDIR} | ${XARGS} ${CHOWN} ${SHAREOWN}:${SHAREGRP}
diff --git a/biology/garlic/distinfo b/biology/garlic/distinfo
index c69a108775f9..5d195dd0af21 100644
--- a/biology/garlic/distinfo
+++ b/biology/garlic/distinfo
@@ -1,2 +1,2 @@
-MD5 (garlic-1.4.tar.gz) = d20462ca2aa0ea7fe78d56b5905558cd
-MD5 (garlic-1.4-doc.tar.gz) = 8272b727100a742fe68b7b209d546a89
+MD5 (garlic-1.4.tar.gz) = 054b8fdb3575609229bac2f743c85cd9
+MD5 (garlic-1.4-doc.tar.gz) = f53f758ca785630c22d19d3744015122
diff --git a/biology/garlic/pkg-plist b/biology/garlic/pkg-plist
index ba1555bf8560..f3bad703eb3e 100644
--- a/biology/garlic/pkg-plist
+++ b/biology/garlic/pkg-plist
@@ -290,6 +290,7 @@ share/garlic/residues.pdb
%%PORTDOCS%%%%EXAMPLESDIR%%/patterns2.script
%%PORTDOCS%%%%EXAMPLESDIR%%/patterns3.script
%%PORTDOCS%%%%EXAMPLESDIR%%/phe.pdb
+%%PORTDOCS%%%%EXAMPLESDIR%%/porin.script
%%PORTDOCS%%%%EXAMPLESDIR%%/porins.script
%%PORTDOCS%%%%EXAMPLESDIR%%/porins2.script
%%PORTDOCS%%%%EXAMPLESDIR%%/porins3.script
@@ -302,4 +303,5 @@ share/garlic/residues.pdb
%%PORTDOCS%%%%EXAMPLESDIR%%/singlebond.pdb
%%PORTDOCS%%%%EXAMPLESDIR%%/test.script
%%PORTDOCS%%%%EXAMPLESDIR%%/trp.pdb
+%%PORTDOCS%%%%EXAMPLESDIR%%/water.pdb
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%