3 files changed, 32 insertions, 10 deletions

diff --git a/biology/adun/Makefile b/biology/adun/Makefile
index 064ce8a1b4b0..2428d9aad2d4 100644
--- a/biology/adun/Makefile
+++ b/biology/adun/Makefile
@@ -6,8 +6,7 @@
 #
 
 PORTNAME=	adun
-PORTVERSION=	0.8.2
-PORTREVISION=	4
+PORTVERSION=	0.81
 CATEGORIES=	biology gnustep
 MASTER_SITES=	http://download.gna.org/adun/
 DISTNAME=	Adun-${PORTVERSION}
@@ -24,11 +23,7 @@ USE_GNUSTEP_BUILD=	yes
 USE_GNUSTEP_INSTALL=	yes
 USE_GNUSTEP_LDCONFIG=	${GNUSTEP_LOCAL_LIBRARIES}
 
-# does not work
-#PORTSCOUT=	skipv:0.74,0.73,0.72,0.71
-PORTSCOUT=	limit:^0\.8\.
-
-DEFAULT_LIBVERSION2=	0.11
+DEFAULT_LIBVERSION2=	0.13
 DEFAULT_LIBVERSION3=	3.0.1
 DEFAULT_LIBVERSION4=	0.6
 DEFAULT_LIBVERSION5=	0.1
@@ -50,6 +45,7 @@ MAKE_ENV+=	GSL_INCLUDE_DIR=${LOCALBASE}/include
 post-patch:
 	${REINPLACE_CMD} -e 's|^GNUSTEP_INSTALLATION_DOMAIN|#GNUSTEP_INSTALLATION_DOMAIN|' \
 		${WRKSRC}/GNUmakefile \
+		${WRKSRC}/Tools/AdunShell/GNUmakefile \
 		${WRKSRC}/Tools/GNUmakefile \
 		${WRKSRC}/Tools/ResultsConverter/GNUmakefile \
 		${WRKSRC}/MolTalk/GNUmakefile.preamble \
diff --git a/biology/adun/distinfo b/biology/adun/distinfo
index 723528cd81fc..086afeda001e 100644
--- a/biology/adun/distinfo
+++ b/biology/adun/distinfo
@@ -1,3 +1,3 @@
-MD5 (Adun-0.8.2.tar.gz) = 7b6866bcce8632c849043105213be591
-SHA256 (Adun-0.8.2.tar.gz) = 7086a8adab7e4716683fa6a02ac70b7da705a9862a40fbcdb2ac5d110f045898
-SIZE (Adun-0.8.2.tar.gz) = 998386
+MD5 (Adun-0.81.tar.gz) = fb34517ff9a7071bf65b45fe96d7077b
+SHA256 (Adun-0.81.tar.gz) = 7c6c8cdf334cdad9f877705bc6eece7c4ee89d49801d606b8069d1645b734c9f
+SIZE (Adun-0.81.tar.gz) = 4554395
diff --git a/biology/adun/pkg-plist b/biology/adun/pkg-plist
index 8afd76cf6267..82ca3762dc69 100644
--- a/biology/adun/pkg-plist
+++ b/biology/adun/pkg-plist
@@ -4,6 +4,9 @@ Local/Applications/UL.app/Resources/Converter.gorm/data.info
 Local/Applications/UL.app/Resources/Converter.gorm/info.nib
 Local/Applications/UL.app/Resources/Converter.gorm/keyedobjects.nib
 Local/Applications/UL.app/Resources/Converter.gorm/objects.gorm
+Local/Applications/UL.app/Resources/CreateAttributePanel.gorm/data.classes
+Local/Applications/UL.app/Resources/CreateAttributePanel.gorm/data.info
+Local/Applications/UL.app/Resources/CreateAttributePanel.gorm/objects.gorm
 Local/Applications/UL.app/Resources/DatabasePanel.gorm/classes.nib
 Local/Applications/UL.app/Resources/DatabasePanel.gorm/data.classes
 Local/Applications/UL.app/Resources/DatabasePanel.gorm/data.info
@@ -27,6 +30,12 @@ Local/Applications/UL.app/Resources/ProgressPanel.gorm/data.info
 Local/Applications/UL.app/Resources/ProgressPanel.gorm/info.nib
 Local/Applications/UL.app/Resources/ProgressPanel.gorm/keyedobjects.nib
 Local/Applications/UL.app/Resources/ProgressPanel.gorm/objects.gorm
+Local/Applications/UL.app/Resources/QuickStartFiles/1BK2
+Local/Applications/UL.app/Resources/QuickStartFiles/ContainerTemplate
+Local/Applications/UL.app/Resources/QuickStartFiles/ExplicitSolventTemplate
+Local/Applications/UL.app/Resources/QuickStartFiles/GDP
+Local/Applications/UL.app/Resources/QuickStartFiles/GasPhaseTemplate
+Local/Applications/UL.app/Resources/QuickStartFiles/H2O
 Local/Applications/UL.app/Resources/Results.gorm/data.classes
 Local/Applications/UL.app/Resources/Results.gorm/data.info
 Local/Applications/UL.app/Resources/Results.gorm/objects.gorm
@@ -44,6 +53,8 @@ Local/Applications/UL.app/Resources/apply.png
 Local/Applications/UL.app/Resources/dataset-close.png
 Local/Applications/UL.app/Resources/defaultOptions.plist
 Local/Applications/UL.app/Resources/document-save.png
+Local/Applications/UL.app/Resources/export.png
+Local/Applications/UL.app/Resources/icon.tiff
 Local/Applications/UL.app/Resources/reload.png
 Local/Applications/UL.app/Resources/splash.tiff
 Local/Applications/UL.app/UL
@@ -70,15 +81,18 @@ Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Head
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunBerendsenThermostat.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunCellListHandler.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunCharmmForceField.h
+Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunCheckpointManager.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunConfigurationGenerator.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunContainerDataSource.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunController.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunCore.h
+Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunCuboidBox.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunDataMatrix.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunDataSet.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunDataSource.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunDefinitions.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunDynamics.h
+Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunElementSelection.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunEllipsoidBox.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunEnzymixForceField.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunFileSystemSimulationStorage.h
@@ -86,12 +100,14 @@ Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Head
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunForceFieldCollection.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunGRFNonbondedTerm.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunGrid.h
+Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunHarmonicConstraintTerm.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunIOManager.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunInteractionSystem.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunKernel.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunLangevinThermostat.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunLinkedList.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunListHandler.h
+Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunMatrixStructureCoder.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunMemoryManager.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunMinimiser.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunModelObject.h
@@ -105,12 +121,16 @@ Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Head
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunSimpleListHandler.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunSimulationData.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunSimulator.h
+Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunSmoothedGBTerm.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunSphericalBox.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunSystem.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunSystemCollection.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunTemplateProcessor.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunTimer.h
+Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers/AdunTrajectory.h
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Resources/Info-gnustep.plist
+Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Resources/OptimisedCoefficients.plist
+Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Resources/PBBornRadii.plist
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Resources/ScriptingInfo.plist
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/libAdunKernel.so
 Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/libAdunKernel.so.%%MAJORLIBVERSION2%%
@@ -175,6 +195,7 @@ Local/Library/Frameworks/ULFramework.framework/Versions/%%MAJORLIBVERSION4%%/Hea
 Local/Library/Frameworks/ULFramework.framework/Versions/%%MAJORLIBVERSION4%%/Headers/ULProcess.h
 Local/Library/Frameworks/ULFramework.framework/Versions/%%MAJORLIBVERSION4%%/Headers/ULProcessManager.h
 Local/Library/Frameworks/ULFramework.framework/Versions/%%MAJORLIBVERSION4%%/Headers/ULServerInterface.h
+Local/Library/Frameworks/ULFramework.framework/Versions/%%MAJORLIBVERSION4%%/Headers/ULServerManager.h
 Local/Library/Frameworks/ULFramework.framework/Versions/%%MAJORLIBVERSION4%%/Headers/ULSimpleMergerDelegate.h
 Local/Library/Frameworks/ULFramework.framework/Versions/%%MAJORLIBVERSION4%%/Headers/ULSystem.h
 Local/Library/Frameworks/ULFramework.framework/Versions/%%MAJORLIBVERSION4%%/Headers/ULSystemBuilder.h
@@ -204,11 +225,14 @@ Local/Library/Frameworks/ULFramework.framework/libULFramework.so
 Local/Library/Headers/AdunKernel
 Local/Library/Headers/Base/AdBaseFunctions.h
 Local/Library/Headers/Base/AdForceFieldFunctions.h
+Local/Library/Headers/Base/AdGeneralizedBornFunctions.h
 Local/Library/Headers/Base/AdLinkedList.h
 Local/Library/Headers/Base/AdMatrix.h
+Local/Library/Headers/Base/AdQuadratureFunctions.h
 Local/Library/Headers/Base/AdQuaternion.h
 Local/Library/Headers/Base/AdSorter.h
 Local/Library/Headers/Base/AdVector.h
+Local/Library/Headers/Base/AdVolumeFunctions.h
 Local/Library/Headers/MolTalk
 Local/Library/Headers/ULFramework
 Local/Library/Headers/XMLLib/ULAtomListNode.h
@@ -274,11 +298,13 @@ Local/Tools/UL
 @dirrm Local/Applications/UL.app/Resources/Template.gorm
 @dirrm Local/Applications/UL.app/Resources/System.gorm
 @dirrm Local/Applications/UL.app/Resources/Results.gorm
+@dirrm Local/Applications/UL.app/Resources/QuickStartFiles
 @dirrm Local/Applications/UL.app/Resources/ProgressPanel.gorm
 @dirrm Local/Applications/UL.app/Resources/Preferences.gorm
 @dirrm Local/Applications/UL.app/Resources/Options.gorm
 @dirrm Local/Applications/UL.app/Resources/ExportPanel.gorm
 @dirrm Local/Applications/UL.app/Resources/DatabasePanel.gorm
+@dirrm Local/Applications/UL.app/Resources/CreateAttributePanel.gorm
 @dirrm Local/Applications/UL.app/Resources/Converter.gorm
 @dirrm Local/Applications/UL.app/Resources
 @dirrm Local/Applications/UL.app