diff options
| author | Sergey Matveychuk <sem@FreeBSD.org> | 2005-03-12 08:01:19 +0000 |
|---|---|---|
| committer | Sergey Matveychuk <sem@FreeBSD.org> | 2005-03-12 08:01:19 +0000 |
| commit | 0dc38c05bae9baac1675309071a75fb99b8d7d60 (patch) | |
| tree | 2897bd77beecf64120846f5c50ebc1c7b87a0beb /biology/artemis | |
| parent | 3ef4b795f4cf2c7f3fd873d3e4cbb2053b190847 (diff) | |
| download | ports-0dc38c05bae9baac1675309071a75fb99b8d7d60.tar.gz ports-0dc38c05bae9baac1675309071a75fb99b8d7d60.zip | |
Notes
Diffstat (limited to 'biology/artemis')
| -rw-r--r-- | biology/artemis/Makefile | 21 | ||||
| -rw-r--r-- | biology/artemis/distinfo | 4 | ||||
| -rw-r--r-- | biology/artemis/pkg-descr | 18 | ||||
| -rw-r--r-- | biology/artemis/pkg-plist | 2991 |
4 files changed, 1529 insertions, 1505 deletions
diff --git a/biology/artemis/Makefile b/biology/artemis/Makefile index 62e0b21754fa..c1ac9387192d 100644 --- a/biology/artemis/Makefile +++ b/biology/artemis/Makefile @@ -6,30 +6,27 @@ # PORTNAME= artemis -PORTVERSION= 4.0 -PORTREVISION= 1 +PORTVERSION= 6 CATEGORIES= biology -MASTER_SITES= http://www.sanger.ac.uk/Software/Artemis/v4/ -DISTNAME= artemis_compiled_v4 +MASTER_SITES= http://www.sanger.ac.uk/Software/Artemis/v${PORTVERSION}/ +DISTNAME= artemis_compiled_v${PORTVERSION} -MAINTAINER= chuynh@biolateral.com.au +MAINTAINER= fernan@iib.unsam.edu.ar COMMENT= A DNA sequence viewer and annotation tool -RUN_DEPENDS= ${JAVA_COMMAND}:${PORTSDIR}/java/jdk13 - WRKSRC= ${WRKDIR}/${PORTNAME} -JDK_VERSION= 1.3.1 -JDK_DIR= ${PREFIX}/jdk${JDK_VERSION} -JAVA_COMMAND= ${JDK_DIR}/bin/java +USE_JAVA= yes +JAVA_VERSION= 1.4+ +JAVA_RUN= yes NO_BUILD= yes +PLIST_SUB= PORTVERSION="${PORTVERSION}" do-install: @${MKDIR} ${PREFIX}/${PORTNAME}-${PORTVERSION} @${TAR} -C ${WRKSRC} -cf- . | ${TAR} -C ${PREFIX}/${PORTNAME}-${PORTVERSION} -xpf- @${LN} -s ${PREFIX}/${PORTNAME}-${PORTVERSION}/art ${PREFIX}/bin/art - -PLIST_SUB= PORTVERSION="${PORTVERSION}" + @${LN} -s ${PREFIX}/${PORTNAME}-${PORTVERSION}/act ${PREFIX}/bin/act .include <bsd.port.mk> diff --git a/biology/artemis/distinfo b/biology/artemis/distinfo index 41d5803fb9b1..b5e7602972da 100644 --- a/biology/artemis/distinfo +++ b/biology/artemis/distinfo @@ -1,2 +1,2 @@ -MD5 (artemis_compiled_v4.tar.gz) = e970b57e993a6b6d254ae70f83e1304e -SIZE (artemis_compiled_v4.tar.gz) = 4773345 +MD5 (artemis_compiled_v6.tar.gz) = 5ebd3db7edbb74eab5a84df9c693d4e1 +SIZE (artemis_compiled_v6.tar.gz) = 3947732 diff --git a/biology/artemis/pkg-descr b/biology/artemis/pkg-descr index 7aed26ffa578..4bba1ffa98de 100644 --- a/biology/artemis/pkg-descr +++ b/biology/artemis/pkg-descr @@ -1,7 +1,13 @@ -Artemis is a DNA sequence viewer and annotation tool that allows visualisation -of sequence features and the results of analyses within the context of the -sequence, and its six-frame translation. Artemis is written in Java, reads -EMBL or GENBANK format sequences and feature tables, and can work on sequences -of any size. +Artemis is a DNA sequence viewer and annotation tool that allows +visualisation of sequence features and the results of analyses within +the context of the sequence, and its six-frame translation. Artemis is +written in Java, reads EMBL or GENBANK format sequences and feature +tables, and can work on sequences of any size. -WWW: http://www.sanger.ac.uk/Software/Artemis/manual +ACT (Artemis Comparison Tool) is a DNA sequence comparison viewer based +on Artemis. It can open two or more sequences (and their +annotations/features) together with their comparisons (usually the +result of running blastn or tblastx searches). + +WWW: http://www.sanger.ac.uk/Software/Artemis/manual +WWW: http://www.sanger.ac.uk/Software/ACT/manual diff --git a/biology/artemis/pkg-plist b/biology/artemis/pkg-plist index 03ec13e72536..b4c61867305d 100644 --- a/biology/artemis/pkg-plist +++ b/biology/artemis/pkg-plist @@ -1,1486 +1,1507 @@ -artemis-4.0/CVS/Root -artemis-4.0/CVS/Repository -artemis-4.0/CVS/Entries -artemis-4.0/.cvsignore -artemis-4.0/AppGlobal.java -artemis-4.0/COPYING -artemis-4.0/COPYING.JacORB -artemis-4.0/CorbaApplet.java -artemis-4.0/Diana.java -artemis-4.0/INSTALL -artemis-4.0/Makefile -artemis-4.0/README -artemis-4.0/art -artemis-4.0/art.bat -artemis-4.0/mart -artemis-4.0/results_to_netscape -artemis-4.0/run_blast -artemis-4.0/run_blastn -artemis-4.0/run_blastp -artemis-4.0/run_blastx -artemis-4.0/run_fasta -artemis-4.0/run_hth -artemis-4.0/run_jalview -artemis-4.0/run_sigcleave -artemis-4.0/run_tblastn -artemis-4.0/run_tblastx -artemis-4.0/META-INF/CVS/Root -artemis-4.0/META-INF/CVS/Repository -artemis-4.0/META-INF/CVS/Entries -artemis-4.0/META-INF/MANIFEST.MF -artemis-4.0/collections/CVS/Root -artemis-4.0/collections/CVS/Repository -artemis-4.0/collections/CVS/Entries -artemis-4.0/collections/ArrayEnumeration.java -artemis-4.0/collections/Assertable.java -artemis-4.0/collections/Bag.java -artemis-4.0/collections/BinaryFunction.java -artemis-4.0/collections/CEImpl.java -artemis-4.0/collections/CLCell.java -artemis-4.0/collections/CLEnumeration.java -artemis-4.0/collections/Cell.java -artemis-4.0/collections/CheckedBag.java -artemis-4.0/collections/CheckedCollection.java -artemis-4.0/collections/CheckedMap.java -artemis-4.0/collections/CheckedSeq.java -artemis-4.0/collections/CheckedSet.java -artemis-4.0/collections/Keyed.java -artemis-4.0/collections/CircularList.java -artemis-4.0/collections/Collection.java -artemis-4.0/collections/CollectionEnumeration.java -artemis-4.0/collections/Comparator.java -artemis-4.0/collections/Dynarray.java -artemis-4.0/collections/CorruptedEnumerationException.java -artemis-4.0/collections/DAEnumeration.java -artemis-4.0/collections/DefaultComparator.java -artemis-4.0/collections/DefaultImplementations.java -artemis-4.0/collections/ElementSortedCollection.java -artemis-4.0/collections/FilteringEnumeration.java -artemis-4.0/collections/Function.java -artemis-4.0/collections/HTEnumeration.java -artemis-4.0/collections/HTPairEnumeration.java -artemis-4.0/collections/HashTableParams.java -artemis-4.0/collections/HashedMap.java -artemis-4.0/collections/HashedSet.java -artemis-4.0/collections/IllegalElementException.java -artemis-4.0/collections/Immutable.java -artemis-4.0/collections/ImplementationCheckable.java -artemis-4.0/collections/IncrBag.java -artemis-4.0/collections/ImplementationError.java -artemis-4.0/collections/IncrCollectionEnumeration.java -artemis-4.0/collections/IncrImpl.java -artemis-4.0/collections/IncrMap.java -artemis-4.0/collections/IncrSeq.java -artemis-4.0/collections/IncrSet.java -artemis-4.0/collections/InterleavingEnumeration.java -artemis-4.0/collections/KeySortedCollection.java -artemis-4.0/collections/LBEnumeration.java -artemis-4.0/collections/LLCell.java -artemis-4.0/collections/LLCellEnumeration.java -artemis-4.0/collections/LLMap.java -artemis-4.0/collections/LLPair.java -artemis-4.0/collections/LLPairEnumeration.java -artemis-4.0/collections/LinkedBuffer.java -artemis-4.0/collections/LinkedList.java -artemis-4.0/collections/Map.java -artemis-4.0/collections/MappingEnumeration.java -artemis-4.0/collections/Pair.java -artemis-4.0/collections/Predicate.java -artemis-4.0/collections/Procedure.java -artemis-4.0/collections/RBCell.java -artemis-4.0/collections/RBCellEnumeration.java -artemis-4.0/collections/RBMap.java -artemis-4.0/collections/RBPair.java -artemis-4.0/collections/RBPairEnumeration.java -artemis-4.0/collections/RBTree.java -artemis-4.0/collections/Seq.java -artemis-4.0/collections/Set.java -artemis-4.0/collections/SimpleTest.java -artemis-4.0/collections/SortableCollection.java -artemis-4.0/collections/UpdatableBag.java -artemis-4.0/collections/UpdatableBagImpl.java -artemis-4.0/collections/UpdatableCollection.java -artemis-4.0/collections/UpdatableImpl.java -artemis-4.0/collections/UpdatableMap.java -artemis-4.0/collections/UpdatableMapImpl.java -artemis-4.0/collections/javaMake -artemis-4.0/collections/UpdatableSeq.java -artemis-4.0/collections/UpdatableSeqImpl.java -artemis-4.0/collections/UpdatableSet.java -artemis-4.0/collections/UpdatableSetImpl.java -artemis-4.0/collections/collections_Dynarray.h -artemis-4.0/collections/Dynarray.class -artemis-4.0/collections/UpdatableSeqImpl.class -artemis-4.0/collections/UpdatableSeq.class -artemis-4.0/collections/SortableCollection.class -artemis-4.0/collections/Seq.class -artemis-4.0/collections/UpdatableImpl.class -artemis-4.0/collections/UpdatableCollection.class -artemis-4.0/collections/IllegalElementException.class -artemis-4.0/collections/CorruptedEnumerationException.class -artemis-4.0/collections/ImplementationError.class -artemis-4.0/collections/Collection.class -artemis-4.0/collections/Assertable.class -artemis-4.0/collections/ImplementationCheckable.class -artemis-4.0/collections/Comparator.class -artemis-4.0/collections/Predicate.class -artemis-4.0/collections/CollectionEnumeration.class -artemis-4.0/collections/DAEnumeration.class -artemis-4.0/collections/CEImpl.class -artemis-4.0/collections/KeySortedCollection.class -artemis-4.0/collections/Map.class -artemis-4.0/collections/ElementSortedCollection.class -artemis-4.0/collections/Bag.class -artemis-4.0/collections/Set.class -artemis-4.0/collections/RBTree.class -artemis-4.0/collections/UpdatableBagImpl.class -artemis-4.0/collections/UpdatableBag.class -artemis-4.0/collections/RBCell.class -artemis-4.0/collections/Cell.class -artemis-4.0/collections/DefaultComparator.class -artemis-4.0/collections/RBCellEnumeration.class -artemis-4.0/collections/Keyed.class -artemis-4.0/corba/CVS/Root -artemis-4.0/corba/CVS/Repository -artemis-4.0/corba/CVS/Entries -artemis-4.0/corba/apollo.idl -artemis-4.0/corba/ensembl.idl -artemis-4.0/corba/nsdb.idl -artemis-4.0/corba/nsdb_write.idl -artemis-4.0/corba/seqdb.idl -artemis-4.0/corba/types.idl -artemis-4.0/diana/CVS/Root -artemis-4.0/diana/CVS/Repository -artemis-4.0/diana/CVS/Entries -artemis-4.0/diana/AlignMatch.java -artemis-4.0/diana/AlignMatchVector.java -artemis-4.0/diana/ChangeEvent.java -artemis-4.0/diana/ChangeListener.java -artemis-4.0/diana/ClipBoard.java -artemis-4.0/diana/ComparisonData.java -artemis-4.0/diana/ComparisonDataFactory.java -artemis-4.0/diana/ComparisonDataParseException.java -artemis-4.0/diana/Entry.java -artemis-4.0/diana/EntryChangeEvent.java -artemis-4.0/diana/EntryChangeListener.java -artemis-4.0/diana/EntryGroup.java -artemis-4.0/diana/EntryGroupChangeEvent.java -artemis-4.0/diana/EntryGroupChangeListener.java -artemis-4.0/diana/EntrySource.java -artemis-4.0/diana/plot/CVS/Root -artemis-4.0/diana/plot/CVS/Repository -artemis-4.0/diana/plot/CVS/Entries -artemis-4.0/diana/plot/AGWindowAlgorithm.java -artemis-4.0/diana/plot/ATDeviationAlgorithm.java -artemis-4.0/diana/plot/Algorithm.java -artemis-4.0/diana/plot/BaseAlgorithm.java -artemis-4.0/diana/plot/Codon12CorrelationAlgorithm.java -artemis-4.0/diana/plot/CodonUsageAlgorithm.java -artemis-4.0/diana/plot/CodonUsageFormatException.java -artemis-4.0/diana/plot/CodonUsageWeight.java -artemis-4.0/diana/plot/CodonWeight.java -artemis-4.0/diana/plot/CoilFeatureAlgorithm.java -artemis-4.0/diana/plot/HydroAlgorithm.java -artemis-4.0/diana/plot/FeatureAlgorithm.java -artemis-4.0/diana/plot/GCDeviationAlgorithm.java -artemis-4.0/diana/plot/GCFrameAlgorithm.java -artemis-4.0/diana/plot/GCSDWindowAlgorithm.java -artemis-4.0/diana/plot/GCWindowAlgorithm.java -artemis-4.0/diana/plot/HydrophilicityAlgorithm.java -artemis-4.0/diana/plot/HydrophobicityAlgorithm.java -artemis-4.0/diana/plot/UserDataAlgorithm.java -artemis-4.0/diana/plot/CodonUsageAlgorithm.class -artemis-4.0/diana/plot/BaseAlgorithm.class -artemis-4.0/diana/plot/Algorithm.class -artemis-4.0/diana/plot/UserDataAlgorithm.class -artemis-4.0/diana/plot/CodonUsageWeight.class -artemis-4.0/diana/plot/CodonWeight.class -artemis-4.0/diana/plot/GCWindowAlgorithm.class -artemis-4.0/diana/plot/GCSDWindowAlgorithm.class -artemis-4.0/diana/plot/AGWindowAlgorithm.class -artemis-4.0/diana/plot/GCFrameAlgorithm.class -artemis-4.0/diana/plot/Codon12CorrelationAlgorithm.class -artemis-4.0/diana/plot/GCDeviationAlgorithm.class -artemis-4.0/diana/plot/ATDeviationAlgorithm.class -artemis-4.0/diana/plot/CodonUsageFormatException.class -artemis-4.0/diana/plot/FeatureAlgorithm.class -artemis-4.0/diana/plot/HydroAlgorithm.class -artemis-4.0/diana/plot/HydrophobicityAlgorithm.class -artemis-4.0/diana/plot/HydrophilicityAlgorithm.class -artemis-4.0/diana/plot/CoilFeatureAlgorithm.class -artemis-4.0/diana/EntrySourceVector.java -artemis-4.0/diana/EntryVector.java -artemis-4.0/diana/ExternalApplication.java -artemis-4.0/diana/ExternalProgram.java -artemis-4.0/diana/ExternalProgramException.java -artemis-4.0/diana/ExternalProgramVector.java -artemis-4.0/diana/ExternalSearchProgram.java -artemis-4.0/diana/Feature.java -artemis-4.0/diana/FeatureChangeEvent.java -artemis-4.0/diana/FeatureChangeListener.java -artemis-4.0/diana/FeatureEnumeration.java -artemis-4.0/diana/FeatureFromVectorPredicate.java -artemis-4.0/diana/FeatureKeyPredicate.java -artemis-4.0/diana/FeatureKeyQualifierPredicate.java -artemis-4.0/diana/FeatureSegment.java -artemis-4.0/diana/FeaturePredicate.java -artemis-4.0/diana/FeatureSegmentVector.java -artemis-4.0/diana/FeatureVector.java -artemis-4.0/diana/FilteredEntryGroup.java -artemis-4.0/diana/GotoEvent.java -artemis-4.0/diana/GotoEventSource.java -artemis-4.0/diana/GotoListener.java -artemis-4.0/diana/LastSegmentException.java -artemis-4.0/diana/Logger.java -artemis-4.0/diana/MSPcrunchComparisonData.java -artemis-4.0/diana/MUMmerComparisonData.java -artemis-4.0/diana/Options.java -artemis-4.0/diana/Selectable.java -artemis-4.0/diana/Selection.java -artemis-4.0/diana/SelectionChangeEvent.java -artemis-4.0/diana/SelectionChangeListener.java -artemis-4.0/diana/helix.gif -artemis-4.0/diana/SimpleComparisonData.java -artemis-4.0/diana/SimpleEntryGroup.java -artemis-4.0/diana/SimpleGotoEventSource.java -artemis-4.0/diana/sanger-centre.gif -artemis-4.0/diana/components/CVS/Root -artemis-4.0/diana/components/CVS/Repository -artemis-4.0/diana/components/CVS/Entries -artemis-4.0/diana/components/ActMain.java -artemis-4.0/diana/components/AddMenu.java -artemis-4.0/diana/components/AlignmentViewer.java -artemis-4.0/diana/components/ArtemisMain.java -artemis-4.0/diana/components/BasePlot.java -artemis-4.0/diana/components/BasePlotGroup.java -artemis-4.0/diana/components/CanvasPanel.java -artemis-4.0/diana/components/Comparator.java -artemis-4.0/diana/components/ComparatorDialog.java -artemis-4.0/diana/components/CorbaEntrySource.java -artemis-4.0/diana/components/DisplayAdjustmentEvent.java -artemis-4.0/diana/components/DisplayAdjustmentListener.java -artemis-4.0/diana/components/DisplayComponent.java -artemis-4.0/diana/components/EMBLCorbaEntrySource.java -artemis-4.0/diana/components/EditMenu.java -artemis-4.0/diana/components/EnsemblEntrySource.java -artemis-4.0/diana/components/EntryActionListener.java -artemis-4.0/diana/components/EntryEdit.java -artemis-4.0/diana/components/EntryEditVector.java -artemis-4.0/diana/components/EntryFileDialog.java -artemis-4.0/diana/components/EntryGroupDisplay.java -artemis-4.0/diana/components/EntryGroupInfoDisplay.java -artemis-4.0/diana/components/EntryGroupMenu.java -artemis-4.0/diana/components/EntryGroupPanel.java -artemis-4.0/diana/components/EntryHeaderEdit.java -artemis-4.0/diana/components/ExternalProgramOptions.java -artemis-4.0/diana/components/FeatureAminoAcidViewer.java -artemis-4.0/diana/components/FeatureBaseViewer.java -artemis-4.0/diana/components/FeatureDisplay.java -artemis-4.0/diana/components/FeatureDisplayOwner.java -artemis-4.0/diana/components/FeatureEdit.java -artemis-4.0/diana/components/FeatureInfo.java -artemis-4.0/diana/components/FeatureList.java -artemis-4.0/diana/components/FeatureListFrame.java -artemis-4.0/diana/components/FeaturePlot.java -artemis-4.0/diana/components/FeaturePlotGroup.java -artemis-4.0/diana/components/FeaturePopup.java -artemis-4.0/diana/components/FeatureViewer.java -artemis-4.0/diana/components/FileDialogEntrySource.java -artemis-4.0/diana/components/FileViewer.java -artemis-4.0/diana/components/GotoMenu.java -artemis-4.0/diana/components/KeyChoice.java -artemis-4.0/diana/components/KeyChooser.java -artemis-4.0/diana/components/ListDialog.java -artemis-4.0/diana/components/LogViewer.java -artemis-4.0/diana/components/MarkerRangeRequester.java -artemis-4.0/diana/components/MarkerRangeRequesterEvent.java -artemis-4.0/diana/components/MarkerRangeRequesterListener.java -artemis-4.0/diana/components/MessageDialog.java -artemis-4.0/diana/components/MessageFrame.java -artemis-4.0/diana/components/Navigator.java -artemis-4.0/diana/components/Plot.java -artemis-4.0/diana/components/PlotMouseListener.java -artemis-4.0/diana/components/ProcessWatcher.java -artemis-4.0/diana/components/ProcessWatcherEvent.java -artemis-4.0/diana/components/ProcessWatcherListener.java -artemis-4.0/diana/components/QualifierChoice.java -artemis-4.0/diana/components/RawFeatureEdit.java -artemis-4.0/diana/components/RunMenu.java -artemis-4.0/diana/components/ScoreChangeEvent.java -artemis-4.0/diana/components/ScoreChangeListener.java -artemis-4.0/diana/components/ScoreChanger.java -artemis-4.0/diana/components/ScoreScrollbar.java -artemis-4.0/diana/components/SearchResultViewer.java -artemis-4.0/diana/components/SelectMenu.java -artemis-4.0/diana/components/SelectionInfoDisplay.java -artemis-4.0/diana/components/SelectionMenu.java -artemis-4.0/diana/components/SelectionViewer.java -artemis-4.0/diana/components/Selector.java -artemis-4.0/diana/components/SequenceViewer.java -artemis-4.0/diana/components/Splash.java -artemis-4.0/diana/components/TextDialog.java -artemis-4.0/diana/components/TextRequester.java -artemis-4.0/diana/components/TextRequesterEvent.java -artemis-4.0/diana/components/TextRequesterListener.java -artemis-4.0/diana/components/ViewMenu.java -artemis-4.0/diana/components/WritableEMBLCorbaEntrySource.java -artemis-4.0/diana/components/WriteMenu.java -artemis-4.0/diana/components/Plot.class -artemis-4.0/diana/components/YesNoDialog.java -artemis-4.0/diana/components/ArtemisMain.class -artemis-4.0/diana/components/ArtemisMain$1.class -artemis-4.0/diana/components/ArtemisMain$2.class -artemis-4.0/diana/components/ArtemisMain$3.class -artemis-4.0/diana/components/ArtemisMain$4.class -artemis-4.0/diana/components/ArtemisMain$5.class -artemis-4.0/diana/components/ArtemisMain$6.class -artemis-4.0/diana/components/Splash.class -artemis-4.0/diana/components/Splash$1.class -artemis-4.0/diana/components/Splash$2.class -artemis-4.0/diana/components/Splash$3.class -artemis-4.0/diana/components/EntryEditVector.class -artemis-4.0/diana/components/LogViewer.class -artemis-4.0/diana/components/LogViewer$1.class -artemis-4.0/diana/components/EntryEdit.class -artemis-4.0/diana/components/EntryEdit$1.class -artemis-4.0/diana/components/EntryEdit$2.class -artemis-4.0/diana/components/EntryEdit$3.class -artemis-4.0/diana/components/EntryEdit$4.class -artemis-4.0/diana/components/EntryEdit$5.class -artemis-4.0/diana/components/EntryEdit$6.class -artemis-4.0/diana/components/EntryEdit$7.class -artemis-4.0/diana/components/EntryEdit$8.class -artemis-4.0/diana/components/EntryEdit$9.class -artemis-4.0/diana/components/EntryEdit$10.class 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+artemis-%%PORTVERSION%%/type/SpliceConsensusHelper.java +artemis-%%PORTVERSION%%/type/SpliceConsensusHolder.java +artemis-%%PORTVERSION%%/type/SpliceConsensus.java +artemis-%%PORTVERSION%%/type/SpliceConsensusListHolder.java +artemis-%%PORTVERSION%%/type/SpliceConsensusListHelper.java +artemis-%%PORTVERSION%%/type/RepeatUnitHelper.java +artemis-%%PORTVERSION%%/type/RepeatUnitHolder.java +artemis-%%PORTVERSION%%/type/RepeatUnitListHolder.java +artemis-%%PORTVERSION%%/type/RepeatUnitListHelper.java +artemis-%%PORTVERSION%%/type/FuzzyTypeCodeHelper.java +artemis-%%PORTVERSION%%/type/In_ftc.java +artemis-%%PORTVERSION%%/type/Between_ftc.java +artemis-%%PORTVERSION%%/type/Fuzzy.java +artemis-%%PORTVERSION%%/type/Less_ftc.java +artemis-%%PORTVERSION%%/type/Greater_ftc.java +artemis-%%PORTVERSION%%/type/FuzzyHelper.java +artemis-%%PORTVERSION%%/type/FuzzyHolder.java +artemis-%%PORTVERSION%%/type/FuzzyListHolder.java +artemis-%%PORTVERSION%%/type/FuzzyListHelper.java 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+artemis-%%PORTVERSION%%/seqdb/FeatureHolder.java +artemis-%%PORTVERSION%%/seqdb/FeatureHelper.java +artemis-%%PORTVERSION%%/seqdb/Feature.java +artemis-%%PORTVERSION%%/seqdb/FeatureOperations.java +artemis-%%PORTVERSION%%/seqdb/_SeqInfoStub.java +artemis-%%PORTVERSION%%/seqdb/SeqInfoHolder.java +artemis-%%PORTVERSION%%/seqdb/SeqInfoHelper.java +artemis-%%PORTVERSION%%/seqdb/SeqInfo.java +artemis-%%PORTVERSION%%/seqdb/SeqInfoOperations.java +artemis-%%PORTVERSION%%/seqdb/BioSeqOperations.class +artemis-%%PORTVERSION%%/seqdb/SeqInfoOperations.class +artemis-%%PORTVERSION%%/seqdb/BioSeq.class +artemis-%%PORTVERSION%%/seqdb/SeqInfo.class +artemis-%%PORTVERSION%%/seqdb/FeatureOperations.class +artemis-%%PORTVERSION%%/seqdb/Feature.class +artemis-%%PORTVERSION%%/lib/CVS/Root +artemis-%%PORTVERSION%%/lib/CVS/Repository +artemis-%%PORTVERSION%%/lib/CVS/Entries +artemis-%%PORTVERSION%%/lib/LICENSE.Apache +artemis-%%PORTVERSION%%/lib/README +artemis-%%PORTVERSION%%/lib/biojava.jar +artemis-%%PORTVERSION%%/lib/jakarta-regexp-1.2.jar +artemis-%%PORTVERSION%%/lib/jemAlign.jar +artemis-%%PORTVERSION%%/lib/jobcontrol.jar +bin/act bin/art -@dirrm artemis-4.0/META-INF/CVS -@dirrm artemis-4.0/META-INF -@dirrm artemis-4.0/collections/CVS -@dirrm artemis-4.0/collections -@dirrm artemis-4.0/corba/CVS -@dirrm artemis-4.0/corba -@dirrm artemis-4.0/diana/CVS -@dirrm artemis-4.0/diana/plot/CVS -@dirrm artemis-4.0/diana/plot -@dirrm artemis-4.0/diana/components/CVS -@dirrm artemis-4.0/diana/components -@dirrm artemis-4.0/diana/sequence/CVS -@dirrm artemis-4.0/diana/sequence -@dirrm artemis-4.0/diana -@dirrm artemis-4.0/docs/CVS -@dirrm artemis-4.0/docs -@dirrm artemis-4.0/embl/CVS -@dirrm artemis-4.0/embl -@dirrm artemis-4.0/etc/CVS -@dirrm artemis-4.0/etc -@dirrm artemis-4.0/lib/CVS -@dirrm artemis-4.0/lib -@dirrm artemis-4.0/uk/CVS -@dirrm artemis-4.0/uk/ac/sanger/CVS -@dirrm artemis-4.0/uk/ac/sanger/pathogens/CVS -@dirrm artemis-4.0/uk/ac/sanger/pathogens/embl/CVS -@dirrm artemis-4.0/uk/ac/sanger/pathogens/embl -@dirrm artemis-4.0/uk/ac/sanger/pathogens -@dirrm artemis-4.0/uk/ac/CVS -@dirrm artemis-4.0/uk/ac/sanger -@dirrm artemis-4.0/uk/ac -@dirrm artemis-4.0/uk -@dirrm artemis-4.0/type -@dirrm artemis-4.0/nsdb/LocationPackage -@dirrm artemis-4.0/nsdb/NucFeaturePackage -@dirrm artemis-4.0/nsdb/EmblPackage -@dirrm artemis-4.0/nsdb -@dirrm artemis-4.0/seqdb -@dirrm artemis-4.0/Ensembl/artemis -@dirrm artemis-4.0/Ensembl -@dirrm artemis-4.0/CVS -@dirrm artemis-4.0 +@dirrm artemis-%%PORTVERSION%%/images +@dirrm artemis-%%PORTVERSION%%/etc/CVS +@dirrm artemis-%%PORTVERSION%%/etc +@dirrm artemis-%%PORTVERSION%%/uk/CVS +@dirrm artemis-%%PORTVERSION%%/uk/ac/CVS +@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/CVS +@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/CVS +@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components/CVS +@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/components +@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io/CVS +@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/io +@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor/CVS +@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/editor +@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot/CVS +@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/plot +@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence/CVS +@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/sequence +@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util/CVS +@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis/util +@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger/artemis +@dirrm artemis-%%PORTVERSION%%/uk/ac/sanger +@dirrm artemis-%%PORTVERSION%%/uk/ac +@dirrm artemis-%%PORTVERSION%%/uk +@dirrm artemis-%%PORTVERSION%%/nsdb/LocationPackage +@dirrm artemis-%%PORTVERSION%%/nsdb/NucFeaturePackage +@dirrm artemis-%%PORTVERSION%%/nsdb/EmblPackage +@dirrm artemis-%%PORTVERSION%%/nsdb +@dirrm artemis-%%PORTVERSION%%/type +@dirrm artemis-%%PORTVERSION%%/seqdb +@dirrm artemis-%%PORTVERSION%%/lib/CVS +@dirrm artemis-%%PORTVERSION%%/lib +@dirrm artemis-%%PORTVERSION%% |