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author | Jason W. Bacon <jwb@FreeBSD.org> | 2018-05-21 22:15:26 +0000 |
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committer | Jason W. Bacon <jwb@FreeBSD.org> | 2018-05-21 22:15:26 +0000 |
commit | e93d6442939c0ada1b66bc983a616152dfb7b91c (patch) | |
tree | 052dbb3677875131b1d31378d86aec9e14c95182 /biology/clustal-omega | |
parent | 0f9f178e3bd09663db3cd6813babbe965ef97d1c (diff) | |
download | ports-e93d6442939c0ada1b66bc983a616152dfb7b91c.tar.gz ports-e93d6442939c0ada1b66bc983a616152dfb7b91c.zip |
Notes
Diffstat (limited to 'biology/clustal-omega')
-rw-r--r-- | biology/clustal-omega/Makefile | 20 | ||||
-rw-r--r-- | biology/clustal-omega/distinfo | 3 | ||||
-rw-r--r-- | biology/clustal-omega/pkg-descr | 8 | ||||
-rw-r--r-- | biology/clustal-omega/pkg-plist | 32 |
4 files changed, 63 insertions, 0 deletions
diff --git a/biology/clustal-omega/Makefile b/biology/clustal-omega/Makefile new file mode 100644 index 000000000000..c258ec31559f --- /dev/null +++ b/biology/clustal-omega/Makefile @@ -0,0 +1,20 @@ +# $FreeBSD$ + +PORTNAME= clustal-omega +DISTVERSION= 1.2.4 +CATEGORIES= biology +MASTER_SITES= http://www.clustal.org/omega/ + +MAINTAINER= jwb@FreeBSD.org +COMMENT= Multiple alignment of nucleic acid and protein, replaces clustalw + +LICENSE= GPLv2 +LICENSE_FILE= ${WRKSRC}/COPYING + +LIB_DEPENDS= libargtable2.so:devel/argtable + +USES= libtool localbase + +GNU_CONFIGURE= yes + +.include <bsd.port.mk> diff --git a/biology/clustal-omega/distinfo b/biology/clustal-omega/distinfo new file mode 100644 index 000000000000..f0a0f6887699 --- /dev/null +++ b/biology/clustal-omega/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1526846209 +SHA256 (clustal-omega-1.2.4.tar.gz) = 8683d2286d663a46412c12a0c789e755e7fd77088fb3bc0342bb71667f05a3ee +SIZE (clustal-omega-1.2.4.tar.gz) = 1170516 diff --git a/biology/clustal-omega/pkg-descr b/biology/clustal-omega/pkg-descr new file mode 100644 index 000000000000..7c4ad1d69b44 --- /dev/null +++ b/biology/clustal-omega/pkg-descr @@ -0,0 +1,8 @@ +Clustal Omega is the latest addition to the Clustal family. It offers a +significant increase in scalability over previous versions, allowing hundreds +of thousands of sequences to be aligned in only a few hours. It will also make +use of multiple processors, where present. In addition, the quality of +alignments is superior to previous versions, as measured by a range of popular +benchmarks. + +WWW: http://www.clustal.org/omega/ diff --git a/biology/clustal-omega/pkg-plist b/biology/clustal-omega/pkg-plist new file mode 100644 index 000000000000..965f21ae3d7c --- /dev/null +++ b/biology/clustal-omega/pkg-plist @@ -0,0 +1,32 @@ +bin/clustalo +include/clustalo/clustal-omega-config.h +include/clustalo/clustal-omega.h +include/clustalo/clustal/hhalign_wrapper.h +include/clustalo/clustal/ktuple_pair.h +include/clustalo/clustal/log.h +include/clustalo/clustal/mbed.h +include/clustalo/clustal/muscle_tree.h +include/clustalo/clustal/pair_dist.h +include/clustalo/clustal/progress.h +include/clustalo/clustal/seq.h +include/clustalo/clustal/symmatrix.h +include/clustalo/clustal/tree.h +include/clustalo/clustal/util.h +include/clustalo/clustal/weights.h +include/clustalo/hhalign/general.h +include/clustalo/hhalign/hhfunc.h +include/clustalo/squid/gki.h +include/clustalo/squid/gsi64.h +include/clustalo/squid/msa.h +include/clustalo/squid/rk.h +include/clustalo/squid/sqfuncs.h +include/clustalo/squid/squid.h +include/clustalo/squid/sre_random.h +include/clustalo/squid/ssi.h +include/clustalo/squid/stockholm.h +include/clustalo/squid/stopwatch.h +include/clustalo/squid/vectorops.h +include/clustalo/squid/version.h +lib/libclustalo.a +libdata/pkgconfig/clustalo.pc +%%DOCSDIR%%/README |