diff options
| author | Philippe Audeoud <jadawin@FreeBSD.org> | 2008-03-19 13:31:52 +0000 |
|---|---|---|
| committer | Philippe Audeoud <jadawin@FreeBSD.org> | 2008-03-19 13:31:52 +0000 |
| commit | 5a299a59fb4f7df10f3f3173c7ce858a860abc82 (patch) | |
| tree | 7b4f5738d9464a8b3b6b2df6d4c749cf050fd465 /biology/clustalw | |
| parent | 972088dccc9ca7b44a9d55772bd288a151ffc119 (diff) | |
| download | ports-5a299a59fb4f7df10f3f3173c7ce858a860abc82.tar.gz ports-5a299a59fb4f7df10f3f3173c7ce858a860abc82.zip | |
- Update to version 2.0.5
- Add RESTRICTED due to a non-commercial use licence.
PR: ports/121794
Submitted by: KATO Tsuguru <tkato432@yahoo.com>
Approved by: thierry and tabthorpe (mentors)
Notes
Notes:
svn path=/head/; revision=209372
Diffstat (limited to 'biology/clustalw')
| -rw-r--r-- | biology/clustalw/distinfo | 6 | ||||
| -rw-r--r-- | biology/clustalw/pkg-descr | 25 |
2 files changed, 10 insertions, 21 deletions
diff --git a/biology/clustalw/distinfo b/biology/clustalw/distinfo index 451e9a4adab7..12713cf48e53 100644 --- a/biology/clustalw/distinfo +++ b/biology/clustalw/distinfo @@ -1,3 +1,3 @@ -MD5 (clustalw-2.0.3-src.tar.gz) = 77e7cf7fcea6084da22d2b19c52356c2 -SHA256 (clustalw-2.0.3-src.tar.gz) = 01a0dc2a3dc8d342367f5f7117749195a1c0d217c105d0a43e02565979cc459a -SIZE (clustalw-2.0.3-src.tar.gz) = 287805 +MD5 (clustalw-2.0.5-src.tar.gz) = f18a332a61f9cd90fc7c88e122ef7487 +SHA256 (clustalw-2.0.5-src.tar.gz) = 6a21bb7d389cc145c4175ae99f227eda356415731952bb2e58b6c951a205046a +SIZE (clustalw-2.0.5-src.tar.gz) = 289291 diff --git a/biology/clustalw/pkg-descr b/biology/clustalw/pkg-descr index 82a997b506ef..ac19156688eb 100644 --- a/biology/clustalw/pkg-descr +++ b/biology/clustalw/pkg-descr @@ -1,19 +1,8 @@ - CLUSTAL W Multiple Sequence Alignment Program +ClustalW2 is a general purpose multiple sequence alignment program for +DNA or proteins. It produces biologically meaningful multiple sequence +alignments of divergent sequences. It calculates the best match for the +selected sequences, and lines them up so that the identities, +similarities and differences can be seen. Evolutionary relationships +can be seen via viewing Cladograms or Phylograms. -Clustal W is a multiple alignment program for DNA or proteins. -Clustal W was written by Des Higgins (des@chah.ucc.ie), Julie Thompson -(julie@IGBMC.u-strasbg.fr), and Toby Gibson (Gibson@EMBL-Heidelberg.DE). -Version 2.0 has been completely rewritten in C++. - -Original Paper: - Thompson, J.D., D. G. Higgins and T. J. Gibson. 1994. CLUSTAL W: -improving the sensitivity of progressive multiple sequence alignment -through sequence weighting, positions-specific gap penalties and -weight matrix choice. Nucleic Acids Research 22: 4673-4680. - -Tips: - Higgins, D. G., J. D. Thompson, and T. J. Gibson. 1996. Using -CLUSTAL for multiple sequence alignments. Methods in Enzymology 266: -383-402. - -WWW: http://bips.u-strasbg.fr/fr/Documentation/ClustalX/ +WWW: http://www.clustal.org/ |