1 files changed, 96 insertions, 0 deletions

diff --git a/biology/embassy/Makefile b/biology/embassy/Makefile
new file mode 100644
index 000000000000..9580b205cfcc
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+++ b/biology/embassy/Makefile
@@ -0,0 +1,96 @@
+# New ports collection makefile for:	embassy
+# Date created:		1.November.2004
+# Whom:	      		Fernan Aguero <fernan@iib.unsamn.edu.ar>
+#
+# $FreeBSD$
+#
+
+PORTNAME=	embassy
+PORTVERSION=	2.9.0
+CATEGORIES=	biology
+MASTER_SITES=	ftp://ftp.uk.embnet.org/pub/EMBOSS/ \
+		ftp://ftp.es.embnet.org/pub/software/emboss/EMBOSS/ \
+		ftp://ftp.ebi.ac.uk/pub/software/unix/EMBOSS/
+DIST_SUBDIR=	${PORTNAME}
+
+MAINTAINER=	fernan@iib.unsam.edu.ar
+COMMENT=	A collection of contributed EMBOSS applications
+
+BUILD_DEPENDS=	${LOCALBASE}/include/emboss.h:${PORTSDIR}/biology/emboss
+LIB_DEPENDS=	nucleus.1:${PORTSDIR}/biology/emboss:install
+
+USE_SUBMAKE=	yes
+USE_GMAKE=	yes
+GNU_CONFIGURE=	yes
+USE_XLIB=	yes
+USE_MOTIF=	yes
+
+OPTIONS=	DOMAINATRIX	"Protein structure and domain apps" on \
+		EMNU		"EMBOSS simple menu" on \
+		ESIM4		"Align cDNA/EST to genome" on \
+		HMMER		"HMM alignment and searches" on \
+		MEME		"Motif detection" on \
+		MSE		"Sequence editor" on \
+		PHYLIP		"Phylogeny inference" on \
+		TOPO		"Transmembrane display" on
+
+CONFIGURE_ENV+=	CPPFLAGS="-I${PREFIX}/include -I${LOCALBASE}/include" \
+		LDFLAGS="-L${PREFIX}/lib -L${LOCALBASE}/lib"
+
+EMBASSY_WRKDIR=		${WRKSRC}/EMBASSY
+DOMAINATRIX_VERSION=	1.0.0
+EMNU_VERSION=		1.05
+ESIM4_VERSION=		1.0.0
+HMMER_VERSION=		2.1.1
+MEME_VERSION=		2.3.1
+MSE_VERSION=		1.0.0
+TOPO_VERSION=		1.0.0
+PHYLIP_VERSION=		3.57c
+EMBASSY_APPS=		DOMAINATRIX EMNU ESIM4 HMMER MEME MSE PHYLIP TOPO
+
+.include <bsd.port.pre.mk>
+
+.for app in ${EMBASSY_APPS}
+.if defined(WITH_${app})
+APPLIST+=	${app}
+${app}_WRKSRC=	${EMBASSY_WRKDIR}/${app}-${${app}_VERSION}
+${app}_DISTFILE=${app}-${${app}_VERSION}${EXTRACT_SUFX}
+DISTFILES+=	${${app}_DISTFILE}
+PLIST_${app}=	""
+.else
+PLIST_${app}=	"@comment "
+.endif
+PLIST_SUB+=	PLIST_${app}=${PLIST_${app}}
+.endfor
+
+do-extract:
+.for app in ${APPLIST}
+	@ ${MKDIR} ${EMBASSY_WRKDIR}
+	@ cd ${EMBASSY_WRKDIR} && ${EXTRACT_CMD} ${EXTRACT_BEFORE_ARGS} \
+	  ${_DISTDIR}/${${app}_DISTFILE} ${EXTRACT_AFTER_ARGS}
+	@ if [ `id -u` = 0 ]; then \
+	    ${CHMOD} -R ug-s ${${app}_WRKSRC}; \
+	    ${CHOWN} -R 0:0 ${${app}_WRKSRC}; \
+	  fi
+.endfor
+
+do-configure:
+.for app in ${APPLIST}
+	@ cd ${${app}_WRKSRC} && \
+	  ${SETENV} ${CONFIGURE_ENV} ./${CONFIGURE_SCRIPT} ${CONFIGURE_ARGS}
+.endfor
+
+do-build:
+.for app in ${APPLIST}
+	@ cd ${${app}_WRKSRC} && \
+	  ${SETENV} ${MAKE_ENV} ${GMAKE} ${MAKE_FLAGS} ${MAKEFILE} ${MAKE_ARGS}
+.endfor
+
+do-install:
+.for app in ${APPLIST}
+	@ cd ${${app}_WRKSRC} && \
+	  ${SETENV} ${MAKE_ENV} ${GMAKE} ${MAKE_FLAGS} ${MAKEFILE} \
+	  ${MAKE_ARGS} ${INSTALL_TARGET}
+.endfor
+
+.include <bsd.port.post.mk>