1 files changed, 74 insertions, 2 deletions

diff --git a/biology/emboss/Makefile b/biology/emboss/Makefile
index 651c403ee3eb..5ffa3f400065 100644
--- a/biology/emboss/Makefile
+++ b/biology/emboss/Makefile
@@ -7,10 +7,13 @@
 
 PORTNAME=	emboss
 PORTVERSION=	1.7.0
+PORTREVISION=	1
 CATEGORIES=	biology
 MASTER_SITES=	ftp://ftp.uk.embnet.org/pub/EMBOSS/ \
 		ftp://ftp.no.embnet.org/pub/EMBOSS/
-DISTNAME=	EMBOSS-${PORTVERSION}
+DISTFILES=	${PORTNAME:U}-${PORTVERSION}${EXTRACT_SUFX}
+DIST_SUBDIR=	${PORTNAME}
+EXTRACT_ONLY=	${PORTNAME:U}-${PORTVERSION}${EXTRACT_SUFX}
 
 MAINTAINER=	johann@egenetics.com
 
@@ -20,12 +23,51 @@ LIB_DEPENDS=	gd.1:${PORTSDIR}/graphics/gd \
 USE_GMAKE=	yes
 USE_LIBTOOL=	yes
 USE_XLIB=	yes
+PLIST=		${WRKDIR}/pkg-plist
 
-CONFIGURE_ENV=	CPPFLAGS="-I${LOCALBASE}/include/gd" \
+.if exists(${WRKDIRPREFIX}${.CURDIR}/Makefile.inc)
+.include "${WRKDIRPREFIX}${.CURDIR}/Makefile.inc"
+.endif
+
+CONFIGURE_ENV+=	CPPFLAGS="-I${LOCALBASE}/include/gd" \
 		LIBS="-L${LOCALBASE}/lib"
 
+SCRIPTS_ENV+=	WRKDIRPREFIX="${WRKDIRPREFIX}" \
+		MKDIR="${MKDIR}" \
+		RM="${RM}"
+
+WRKSRC=		${WRKDIR}/${PORTNAME:U}-${PORTVERSION}
+EMBASSY_WRKDIR=	${WRKSRC}/EMBASSY
+PHYLIP_VERSION=	3.573c
+MSE_VERSION=	0.0.4
+TOPO_VERSION=	0.1
+.for app in MSE PHYLIP TOPO
+SCRIPTS_ENV+=	${app}_VERSION="${${app}_VERSION}"
+.if defined(WITH_${app})
+APPLIST+=	${app}
+PLISTS+=	${PKGDIR}/pkg-plist.${app}
+${app}_WRKSRC=	${EMBASSY_WRKDIR}/${app}-${${app}_VERSION}
+${app}_DISTFILE=${app}-${${app}_VERSION}${EXTRACT_SUFX}
+DISTFILES+=	${${app}_DISTFILE}
+.endif
+.endfor
+PLISTS+=	${PKGDIR}/pkg-plist
 DOC_DIRS=	doc/manuals doc/tutorials doc/programs/text doc/programs/html
 
+pre-fetch:
+	@ ${SETENV} ${SCRIPTS_ENV} ${SH} ${SCRIPTDIR}/configure.${PORTNAME}
+
+post-extract:
+.for app in ${APPLIST}
+	@ ${MKDIR} ${EMBASSY_WRKDIR}
+	@ cd ${EMBASSY_WRKDIR} && ${EXTRACT_CMD} ${EXTRACT_BEFORE_ARGS} \
+	  ${_DISTDIR}/${${app}_DISTFILE} ${EXTRACT_AFTER_ARGS}
+	@ if [ `id -u` = 0 ]; then \
+	    ${CHMOD} -R ug-s ${${app}_WRKSRC}; \
+	    ${CHOWN} -R 0:0 ${${app}_WRKSRC}; \
+	  fi
+.endfor
+
 post-patch:
 .for DIR in ${DOC_DIRS}
 	@ ${PERL} -pi.orig -e \
@@ -33,11 +75,41 @@ post-patch:
 	  ${WRKSRC}/${DIR}/Makefile.in
 .endfor
 
+post-configure:
+.for app in ${APPLIST}
+	@ (cd ${${app}_WRKSRC} && \
+	  ${SETENV} CC="${CC}" CXX="${CXX}" CFLAGS="${CFLAGS}" \
+	  CXXFLAGS="${CXXFLAGS}" \
+	  INSTALL="/usr/bin/install -c -o ${BINOWN} -g ${BINGRP}" \
+	  INSTALL_DATA="${INSTALL_DATA}" \
+	  INSTALL_PROGRAM="${INSTALL_PROGRAM}" \
+	  INSTALL_SCRIPT="${INSTALL_SCRIPT}" \
+	  ${CONFIGURE_ENV} ./${CONFIGURE_SCRIPT} ${CONFIGURE_ARGS})
+.endfor
+
+post-build:
+.for app in ${APPLIST}
+	@ (cd ${${app}_WRKSRC} && \
+	  ${SETENV} ${MAKE_ENV} ${GMAKE} ${MAKE_FLAGS} ${MAKEFILE} \
+	  ${MAKE_ARGS})
+.endfor
+
+pre-install:
+	@ ${CAT} ${PLISTS} > ${PLIST}
+
 post-install:
+.for app in ${APPLIST}
+	@ (cd ${${app}_WRKSRC} && \
+	  ${SETENV} ${MAKE_ENV} ${GMAKE} ${MAKE_FLAGS} ${MAKEFILE} \
+	  ${MAKE_ARGS} ${INSTALL_TARGET})
+.endfor
 	@ ${INSTALL_DATA} ${WRKSRC}/emboss/acd/emboss.default \
 	  ${PREFIX}/etc/emboss.default.sample
 .if !defined(BATCH)
 	@ ${CAT} ${PKGMESSAGE}
 .endif
 
+post-clean:
+	@ ${RM} -f ${WRKDIRPREFIX}${.CURDIR}/Makefile.inc
+
 .include <bsd.port.mk>