4 files changed, 0 insertions, 86 deletions

diff --git a/biology/emboss/files/patch-aa b/biology/emboss/files/patch-aa
deleted file mode 100644
index 60853ff96c11..000000000000
--- a/biology/emboss/files/patch-aa
+++ /dev/null
@@ -1,26 +0,0 @@
-Add ${PREFIX}/etc as an acceptable location for emboss.default.  (I'm still
-waiting for this to be incorporated into an official release of EMBOSS.)
-
-The port installs ${PREFIX}/etc/emboss.default.sample
-
--- Johann <wjv@FreeBSD.org>
-
-
---- ajax/ajnam.c.orig	Thu Aug 17 20:31:30 2000
-+++ ajax/ajnam.c	Mon Aug 28 15:12:09 2000
-@@ -984,6 +984,15 @@
- 	prefixRootFile = fopen (ajStrStr(namRootStr), "r");
-     }
- 
-+    /* look for $(PREFIX)_ROOT/../emboss.default */
-+
-+    if (!prefixRootFile)
-+    {
-+      ajFmtPrintS (&namRootStr, "%s/etc/%s.default",
-+		   namInstallRoot, prefix);
-+      prefixRootFile = fopen (ajStrStr(namRootStr), "r");
-+    }
-+
-     if (namFileOrig)
- 	(void) ajStrAppC (&namFileOrig, ", ");
-     (void) ajStrApp (&namFileOrig, namRootStr);
diff --git a/biology/emboss/files/patch-ajax::ajjava.c b/biology/emboss/files/patch-ajax::ajjava.c
deleted file mode 100644
index 76189b95c03b..000000000000
--- a/biology/emboss/files/patch-ajax::ajjava.c
+++ /dev/null
@@ -1,11 +0,0 @@
---- ajax/ajjava.c.orig	Thu May  2 22:06:08 2002
-+++ ajax/ajjava.c	Sun May 26 09:14:20 2002
-@@ -75,7 +75,7 @@
- #endif
- 
- #ifndef __ppc__
--#include <crypt.h>
-+#include <unistd.h>
- #endif
- 
- 
diff --git a/biology/emboss/files/patch-configure b/biology/emboss/files/patch-configure
deleted file mode 100644
index da46a3c60faa..000000000000
--- a/biology/emboss/files/patch-configure
+++ /dev/null
@@ -1,11 +0,0 @@
---- configure.orig	Mon Jan 22 23:28:17 2001
-+++ configure	Thu Jan 25 19:07:33 2001
-@@ -1473,7 +1473,7 @@
- 
- 
- 
--AJAX_FIXED_ROOT="\\\"`pwd`/emboss\\\""
-+AJAX_FIXED_ROOT="\\\"${datadir}/${PACKAGE}\\\""
- 
- #AC_PROG_CXX
- for ac_prog in mawk gawk nawk awk
diff --git a/biology/emboss/files/patch-emboss-emboss.default.template b/biology/emboss/files/patch-emboss-emboss.default.template
deleted file mode 100644
index 3bbe6641a0d1..000000000000
--- a/biology/emboss/files/patch-emboss-emboss.default.template
+++ /dev/null
@@ -1,38 +0,0 @@
---- emboss/emboss.default.template.orig	Thu May 24 19:36:39 2001
-+++ emboss/emboss.default.template	Wed May 30 10:23:48 2001
-@@ -1,9 +1,31 @@
--#SET emboss_tempdata name_of_emboss_test_database_directory
-+#####################################################
-+### Configuration options for FreeBSD EMBOSS port ###
-+#####################################################
- 
--# Logfile - set this to a file that any user can append to
--# and EMBOSS applications will automatically write log information
-+# The directory where EMBOSS expects to find run-time
-+# databases.  This is the compiled-in default - change
-+# only if you know what you're doing!
-+#
-+#SET emboss_data %%PREFIX%%/share/EMBOSS/data
- 
--#SET emboss_logfile /packages/emboss/emboss/log
-+# This is an alias which is internal to this
-+# configuration file and is set here merely as a
-+# convenience.  It points to the location where you
-+# have placed your local databases (this will differ
-+# from site to site).
-+#
-+SET emboss_tempdata %%PREFIX%%/share/EMBOSS/databases
-+
-+# Logfile.  If this is uncommented and set to a file
-+# that any user can append to, EMBOSS applications
-+# will automatically log usage information.
-+#
-+#SET emboss_logfile /var/log/emboss.log
-+
-+
-+###########################################
-+### Configuration options for databases ###
-+###########################################
- 
- # swissprot (Puffer fish entries)
- # =========