diff options
| author | Ion-Mihai Tetcu <itetcu@FreeBSD.org> | 2009-06-09 07:53:37 +0000 |
|---|---|---|
| committer | Ion-Mihai Tetcu <itetcu@FreeBSD.org> | 2009-06-09 07:53:37 +0000 |
| commit | e110a3719d6842fe74a06669c87d88bae59d9e44 (patch) | |
| tree | cb0162341a91cf7da7a5b2f7b1b3411d8cf28656 /biology/fasta3 | |
| parent | 22eb6cd7441788304288294fd7b5bd6677dbcf19 (diff) | |
| download | ports-e110a3719d6842fe74a06669c87d88bae59d9e44.tar.gz ports-e110a3719d6842fe74a06669c87d88bae59d9e44.zip | |
Notes
Diffstat (limited to 'biology/fasta3')
| -rw-r--r-- | biology/fasta3/Makefile | 9 | ||||
| -rw-r--r-- | biology/fasta3/distinfo | 6 | ||||
| -rw-r--r-- | biology/fasta3/files/patch-Makefile.freebsd | 19 | ||||
| -rw-r--r-- | biology/fasta3/pkg-plist | 1 |
4 files changed, 27 insertions, 8 deletions
diff --git a/biology/fasta3/Makefile b/biology/fasta3/Makefile index 58c76469ff2e..a09861aea24a 100644 --- a/biology/fasta3/Makefile +++ b/biology/fasta3/Makefile @@ -7,7 +7,7 @@ # PORTNAME= fasta3 -PORTVERSION= 35.4.4 +PORTVERSION= 35.4.7 CATEGORIES= biology MASTER_SITES= http://faculty.virginia.edu/wrpearson/fasta/fasta3/ DISTNAME= fasta-${PORTVERSION} @@ -34,12 +34,11 @@ FASTA3_DOCS= README.versions fasta3x.me fasta3x.doc \ DATA= data/*.mat EXAMPLES= seq/*.aa seq/*.lc seq/*.seq seq/*.lib -MAN1= fasta35.1 fastf3.1 fasts3.1 map_db.1 prss3.1 ps_lav.1 \ - pvcomp.1 +MAN1= fasta35.1 map_db.1 ps_lav.1 pvcomp.1 MLINKS= fasta35.1 tfasta35.1 fasta35.1 fastx35.1 fasta35.1 tfastx35.1 \ fasta35.1 fasty35.1 fasta35.1 tfasty35.1 fasta35.1 ssearch35.1 \ fasta35.1 fastf35.1 fasta35.1 fasts35.1 fasta35.1 tfasts35.1 \ - fasta35.1 fastm35.1 fasta35.1 fastf35.1 fasta35.1 ggsearch35.1 \ + fasta35.1 fastm35.1 fasta35.1 tfastf35.1 fasta35.1 ggsearch35.1 \ fasta35.1 lalign35.1 fasta35.1 prss35.1 fasta35.1 prfx35.1 PLIST_SUB= VER=${PORTVERSION:R:R} @@ -57,7 +56,7 @@ post-install: ${INSTALL_DATA} ${WRKSRC}/${ex} ${EXAMPLESDIR} .endfor .for manpage in ${MAN1} - @ ${INSTALL_MAN} ${WRKSRC}/doc/${manpage} ${MAN1PREFIX}/man/man1/ + ${INSTALL_MAN} ${WRKSRC}/doc/${manpage} ${MAN1PREFIX}/man/man1/ .endfor .if !defined(NOPORTDOCS) @ ${MKDIR} ${DOCSDIR} diff --git a/biology/fasta3/distinfo b/biology/fasta3/distinfo index 06a1ae5f8eb2..669ca64dc165 100644 --- a/biology/fasta3/distinfo +++ b/biology/fasta3/distinfo @@ -1,3 +1,3 @@ -MD5 (fasta-35.4.4.tar.gz) = a96d498fc548c8b65b07f13b9548a36d -SHA256 (fasta-35.4.4.tar.gz) = 744911dd6524e57f63c32d76016bd071e16b7c39c34277b2a4d79a601e74d258 -SIZE (fasta-35.4.4.tar.gz) = 612851 +MD5 (fasta-35.4.7.tar.gz) = b5264743c0cbdf7f4d29de82b725f277 +SHA256 (fasta-35.4.7.tar.gz) = 02b34aee73b610c37c8cc7fc5cc06c045402d424df5ffa6309afb147bd4e6120 +SIZE (fasta-35.4.7.tar.gz) = 630897 diff --git a/biology/fasta3/files/patch-Makefile.freebsd b/biology/fasta3/files/patch-Makefile.freebsd new file mode 100644 index 000000000000..85a554c8f5e9 --- /dev/null +++ b/biology/fasta3/files/patch-Makefile.freebsd @@ -0,0 +1,19 @@ +--- make/Makefile.freebsd.orig 2009-06-08 21:07:00.000000000 -0300 ++++ make/Makefile.freebsd 2009-06-08 21:08:01.000000000 -0300 +@@ -8,6 +8,7 @@ + # defined. In FreeBSD this happens when fasta3 is build from the port or + # when the user has set these variables -- most notably CC and/or CFLAGS + # -- in /etc/make.conf ++LOCALBASE?= /usr/local + + # Compiler executable, and optional flags + CC?= gcc +@@ -38,7 +39,7 @@ + CFLAGS+= ${COMMON_CFLAGS} ${STANDARD_CFLAGS} + + BIN = ../bin +-XDIR = /usr/local/bin ++XDIR = ${LOCALBASE}/bin + + LIB_M+= -lm + diff --git a/biology/fasta3/pkg-plist b/biology/fasta3/pkg-plist index 0ae30a15a15c..578f0d04e515 100644 --- a/biology/fasta3/pkg-plist +++ b/biology/fasta3/pkg-plist @@ -17,6 +17,7 @@ bin/glsearch%%VER%%_t bin/lalign%%VER%% bin/lav2ps bin/lav2svg +bin/list_db bin/map_db bin/ssearch%%VER%% bin/ssearch%%VER%%_t |