diff options
author | Maho Nakata <maho@FreeBSD.org> | 2003-07-28 06:38:37 +0000 |
---|---|---|
committer | Maho Nakata <maho@FreeBSD.org> | 2003-07-28 06:38:37 +0000 |
commit | 4dd4b89f44b04b50c75511d2719b524dfffb1239 (patch) | |
tree | b83901a56aec71c0ddf438dc7a3e10d1040319c7 /biology/garlic | |
parent | 7052fa782aedb367dd5c0d1bcabfafd330a42899 (diff) | |
download | ports-4dd4b89f44b04b50c75511d2719b524dfffb1239.tar.gz ports-4dd4b89f44b04b50c75511d2719b524dfffb1239.zip |
Notes
Diffstat (limited to 'biology/garlic')
-rw-r--r-- | biology/garlic/Makefile | 59 | ||||
-rw-r--r-- | biology/garlic/distinfo | 2 | ||||
-rw-r--r-- | biology/garlic/files/patch-Makefile | 20 | ||||
-rw-r--r-- | biology/garlic/pkg-descr | 12 | ||||
-rw-r--r-- | biology/garlic/pkg-plist | 305 |
5 files changed, 398 insertions, 0 deletions
diff --git a/biology/garlic/Makefile b/biology/garlic/Makefile new file mode 100644 index 000000000000..91a99b83bd43 --- /dev/null +++ b/biology/garlic/Makefile @@ -0,0 +1,59 @@ +# New ports collection makefile for: garlic +# Date created: 28 July 2003 +# Whom: maho@FreeBSD.org +# +# $FreeBSD$ +# + +PORTNAME= garlic +PORTVERSION= 1.4 +CATEGORIES= biology +MASTER_SITES= http://garlic.mefos.hr/sources/garlic-${PORTVERSION}/ +DISTFILES= ${DISTNAME}${EXTRACT_SUFX} +.if !defined(NOPORTDOCS) +DISTFILES+= ${DISTNAME}-doc${EXTRACT_SUFX} +.endif +EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX} + +MAINTAINER= maho@FreeBSD.org +COMMENT= Molecular viewer, editor and visualization program + +USE_REINPLACE= yes +USE_GMAKE= yes +ALL_TARGET= # empty + +.if defined(WITH_OPTIMIZED_FLAGS) +CFLAGS+= -O3 -ffast-math -finline-functions -fomit-frame-pointer -funroll-loops -fexpensive-optimizations -malign-double +.if (${MACHINE_ARCH} == "i386") +CFLAGS+= -mcpu=i686 -march=i686 -mfancy-math-387 +.endif # i386 +.endif + +post-patch: + @${REINPLACE_CMD} -e 's|%%X11BASE%%|${X11BASE}|g ; \ + s|%%LOCALBASE%%|${LOCALBASE}|g ;\ + s|%%CC%%|${CC}|g ; \ + s|%%CFLAGS%%|${CFLAGS}|g' ${WRKSRC}/Makefile +.if !defined(WITH_OPTIMIZED_FLAGS) + @${ECHO} "You can optimize by setting WITH_OPTIMIZED_FLAGS=yes." +.endif + +do-install: + ${MKDIR} ${DATADIR} + ${INSTALL_PROGRAM} ${WRKSRC}/garlic ${PREFIX}/bin + ${INSTALL_DATA} ${WRKSRC}/.garlicrc ${DATADIR} + ${INSTALL_DATA} ${WRKSRC}/residues.pdb ${DATADIR} +.if !defined(NOPORTDOCS) + @${MKDIR} ${EXAMPLESDIR} + @${INSTALL_DATA} ${WRKSRC}/*.pdb ${EXAMPLESDIR} + @${INSTALL_DATA} ${WRKSRC}/*.script ${EXAMPLESDIR} + @${MKDIR} ${DOCSDIR} + @${MKDIR} ${WRKDIR}/doc + @cd ${WRKDIR}/doc ; ${TAR} xvfz ${DISTDIR}/${DISTNAME}-doc${EXTRACT_SUFX} + @${TAR} -C ${WRKDIR}/doc/${DISTNAME} -cf - . | \ + ${TAR} -C ${DOCSDIR} -xf - + @${FIND} ${DOCSDIR} | ${XARGS} ${CHOWN} ${SHAREOWN}:${SHAREGRP} + @${FIND} ${DOCSDIR} -type f | ${XARGS} ${CHMOD} ${SHAREMODE} +.endif + +.include <bsd.port.mk> diff --git a/biology/garlic/distinfo b/biology/garlic/distinfo new file mode 100644 index 000000000000..515690f4f9ed --- /dev/null +++ b/biology/garlic/distinfo @@ -0,0 +1,2 @@ +MD5 (garlic-1.4.tar.gz) = 2cff4654d09e2049e21328f0b93fe9c2 +MD5 (garlic-1.4-doc.tar.gz) = cb418171d211cec9fc857b3e5d63803c diff --git a/biology/garlic/files/patch-Makefile b/biology/garlic/files/patch-Makefile new file mode 100644 index 000000000000..18a9d63d72af --- /dev/null +++ b/biology/garlic/files/patch-Makefile @@ -0,0 +1,20 @@ +--- Makefile.orig Fri May 30 20:27:25 2003 ++++ Makefile Mon Jul 28 12:01:48 2003 +@@ -1,14 +1,14 @@ +-CC = gcc ++CC = %%CC%% + + #CCOPT = -O + #CCOPT = -O3 + #CCOPT = -O3 -g3 + #CCOPT = -ansi -pedantic -g3 +-CCOPT = -ansi -pedantic -O -Wall -Wstrict-prototypes -g3 ++CCOPT = %%CFLAGS%% -I%%LOCALBASE%%/include -I%%X11BASE%%/include + + HEADERS = defines.h typedefs.h + +-LIBPATH = -L/usr/X11R6/lib ++LIBPATH = -L%%X11BASE%%/lib + + LINKOPT = -lX11 -lm + diff --git a/biology/garlic/pkg-descr b/biology/garlic/pkg-descr new file mode 100644 index 000000000000..7b1a95ff6153 --- /dev/null +++ b/biology/garlic/pkg-descr @@ -0,0 +1,12 @@ +Free, open source molecular viewer and editor for +protein structure, DNA structure, PDB, molecular rendering, +biological macromolecule. +Atoms may be drawn as spheres of different sizes. +Bonds may be drawn as cylindrical sticks, conical sticks or as curved surfaces. +Five types of slab are available: planar, spherical, +semi-spherical, cylindrical and semi-cylindrical. +The slab position and thickness are visible in a small window. +Atomic bonds as well as atoms are treated as independent drawable objects. +and more! + +WWW: http://ccp14.semo.edu/ccp/web-mirrors/garlic/garlic/ diff --git a/biology/garlic/pkg-plist b/biology/garlic/pkg-plist new file mode 100644 index 000000000000..6bb84f75df6b --- /dev/null +++ b/biology/garlic/pkg-plist @@ -0,0 +1,305 @@ +bin/garlic +share/garlic/.garlicrc 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