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authorJohann Visagie <wjv@FreeBSD.org>2001-07-04 08:39:40 +0000
committerJohann Visagie <wjv@FreeBSD.org>2001-07-04 08:39:40 +0000
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tree6351268592432f8944bd2ca7f815a718b613192d /biology/grappa/pkg-descr
parent9d8379b1a4d5ff199cf4cae26d25e10e96e0905b (diff)
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+GRAPPA: Genome Rearrangements Analysis under Parsimony and other
+Phylogenetic Algorithms
+
+This suite of programs implements the approach to phylogeny
+reconstruction from gene orders described in the paper
+ Moret, B.M.E., Wyman, S., Bader, D.A., Warnow, T., and Yan, M.,
+ ``A detailed study of breakpoint analysis,''
+ Proc. 6th Pacific Symp. Biocomputing PSB 2001, Hawaii (2001).
+In its current state, "grappa" allows one to explore either the
+space of all possible trees on n labelled leaves or the space of all
+such trees that obey (are refinements of) a particular constraint tree.
+
+"invdist" takes the first two genomes in the input file and returns
+their inversion distance.
+"distmat" prints the inversion and breakpoint distance matrices.
+
+WWW: http://www.cs.unm.edu/~moret/GRAPPA/