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author | Johann Visagie <wjv@FreeBSD.org> | 2001-07-04 08:39:40 +0000 |
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committer | Johann Visagie <wjv@FreeBSD.org> | 2001-07-04 08:39:40 +0000 |
commit | f046432f9c655aafb07c6e20150b206fffe830b0 (patch) | |
tree | 6351268592432f8944bd2ca7f815a718b613192d /biology/grappa/pkg-descr | |
parent | 9d8379b1a4d5ff199cf4cae26d25e10e96e0905b (diff) |
Notes
Diffstat (limited to 'biology/grappa/pkg-descr')
-rw-r--r-- | biology/grappa/pkg-descr | 17 |
1 files changed, 17 insertions, 0 deletions
diff --git a/biology/grappa/pkg-descr b/biology/grappa/pkg-descr new file mode 100644 index 000000000000..ce732438a251 --- /dev/null +++ b/biology/grappa/pkg-descr @@ -0,0 +1,17 @@ +GRAPPA: Genome Rearrangements Analysis under Parsimony and other +Phylogenetic Algorithms + +This suite of programs implements the approach to phylogeny +reconstruction from gene orders described in the paper + Moret, B.M.E., Wyman, S., Bader, D.A., Warnow, T., and Yan, M., + ``A detailed study of breakpoint analysis,'' + Proc. 6th Pacific Symp. Biocomputing PSB 2001, Hawaii (2001). +In its current state, "grappa" allows one to explore either the +space of all possible trees on n labelled leaves or the space of all +such trees that obey (are refinements of) a particular constraint tree. + +"invdist" takes the first two genomes in the input file and returns +their inversion distance. +"distmat" prints the inversion and breakpoint distance matrices. + +WWW: http://www.cs.unm.edu/~moret/GRAPPA/ |