diff options
| author | Yen-Ming Lee <leeym@FreeBSD.org> | 2005-04-15 18:48:57 +0000 |
|---|---|---|
| committer | Yen-Ming Lee <leeym@FreeBSD.org> | 2005-04-15 18:48:57 +0000 |
| commit | 5da6643360ee2611eeb771058e432c5e1a5a689e (patch) | |
| tree | a2c61933976a8a1423810b9b17cc015937833367 /biology/grappa | |
| parent | 9aaef51129801522de5728c6f2cf0b5ef905dc4c (diff) | |
| download | ports-5da6643360ee2611eeb771058e432c5e1a5a689e.tar.gz ports-5da6643360ee2611eeb771058e432c5e1a5a689e.zip | |
Notes
Diffstat (limited to 'biology/grappa')
| -rw-r--r-- | biology/grappa/Makefile | 19 | ||||
| -rw-r--r-- | biology/grappa/distinfo | 4 | ||||
| -rw-r--r-- | biology/grappa/files/patch-aa | 16 | ||||
| -rw-r--r-- | biology/grappa/pkg-plist | 3 |
4 files changed, 13 insertions, 29 deletions
diff --git a/biology/grappa/Makefile b/biology/grappa/Makefile index 29eeb403d005..f3bc53433373 100644 --- a/biology/grappa/Makefile +++ b/biology/grappa/Makefile @@ -1,23 +1,26 @@ # New ports collection makefile for: grappa # Date created: 30 June 2001 -# Whom: dbader@eece.unm.edu +# Whom: dbader@ece.unm.edu # # $FreeBSD$ # PORTNAME= grappa -PORTVERSION= 1.0.3 -PORTREVISION= 1 +PORTVERSION= 2.0 CATEGORIES= biology -MASTER_SITES= http://www.cs.unm.edu/~moret/ -DISTNAME= GRAPPA-1.03 +MASTER_SITES= http://www.cs.unm.edu/~moret/GRAPPA/ +DISTNAME= GRAPPA20 -MAINTAINER= dbader@eece.unm.edu +MAINTAINER= dbader@ece.unm.edu COMMENT= Genome Rearrangements Analysis and Phylogeny Software -BUILD_DEPENDS= ${LOCALBASE}/lib/libconcorde.a:${PORTSDIR}/math/concorde - USE_GMAKE= yes +USE_REINPLACE= yes + +PLIST_FILES= bin/grappa bin/invdist bin/distmat + +post-patch: + @${REINPLACE_CMD} -e 's/-lpthread/${PTHREAD_LIBS}/g' ${WRKSRC}/${MAKEFILE} do-install: ${INSTALL_PROGRAM} ${WRKSRC}/grappa ${PREFIX}/bin diff --git a/biology/grappa/distinfo b/biology/grappa/distinfo index 9b794f922f3a..efc00742452c 100644 --- a/biology/grappa/distinfo +++ b/biology/grappa/distinfo @@ -1,2 +1,2 @@ -MD5 (GRAPPA-1.03.tar.gz) = 4bc58525d0a6ad91f3db64175d4db176 -SIZE (GRAPPA-1.03.tar.gz) = 82952 +MD5 (GRAPPA20.tar.gz) = 1422693550004415795b2c7872fe9649 +SIZE (GRAPPA20.tar.gz) = 172261 diff --git a/biology/grappa/files/patch-aa b/biology/grappa/files/patch-aa deleted file mode 100644 index 3c9e57471415..000000000000 --- a/biology/grappa/files/patch-aa +++ /dev/null @@ -1,16 +0,0 @@ ---- Makefile.orig Wed Mar 14 01:21:45 2001 -+++ Makefile Fri Jun 29 20:36:40 2001 -@@ -19,10 +19,10 @@ - - ifeq ($(USE_CONCORDE),YES) - # Set CONCORDE_ROOT to the location of the compiler concorde libraries -- CONCORDE_ROOT = $(HOME)/concorde -- CONCORDE_INC = $(CONCORDE_ROOT)/INCLUDE -+ CONCORDE_ROOT = /usr/local -+ CONCORDE_INC = $(CONCORDE_ROOT)/include/concorde - CONCORDE_CFLAGS = -I$(CONCORDE_INC) -DCONCORDE -- CONCORDE_LIB = $(CONCORDE_ROOT)/concorde.a -+ CONCORDE_LIB = $(CONCORDE_ROOT)/lib/libconcorde.a - else - CONCORDE_CFLAGS = - CONCORDE_LIB = diff --git a/biology/grappa/pkg-plist b/biology/grappa/pkg-plist deleted file mode 100644 index 3e22e0450c58..000000000000 --- a/biology/grappa/pkg-plist +++ /dev/null @@ -1,3 +0,0 @@ -bin/grappa -bin/invdist -bin/distmat |