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| author | Bartek Rutkowski <robak@FreeBSD.org> | 2015-06-03 17:04:19 +0000 |
|---|---|---|
| committer | Bartek Rutkowski <robak@FreeBSD.org> | 2015-06-03 17:04:19 +0000 |
| commit | b23eb331114d289d1020995af9ee7c322dc30e04 (patch) | |
| tree | a2d3c0b8854cea0efdb641c93817e88e24ff5001 /biology/mafft | |
| parent | ca35b0771ce1ff94398aec4dcd823dd0eeeb03e1 (diff) | |
| download | ports-b23eb331114d289d1020995af9ee7c322dc30e04.tar.gz ports-b23eb331114d289d1020995af9ee7c322dc30e04.zip | |
Notes
Diffstat (limited to 'biology/mafft')
| -rw-r--r-- | biology/mafft/Makefile | 8 | ||||
| -rw-r--r-- | biology/mafft/distinfo | 4 | ||||
| -rw-r--r-- | biology/mafft/pkg-plist | 3 |
3 files changed, 7 insertions, 8 deletions
diff --git a/biology/mafft/Makefile b/biology/mafft/Makefile index 8b7e67684eac..6bd72075d8e8 100644 --- a/biology/mafft/Makefile +++ b/biology/mafft/Makefile @@ -1,8 +1,8 @@ -# Created by: Reed A. Cartwright <reed@cartwrig.ht> +# Created by: Fernan Aguero <fernan@iib.unsam.edu.ar> # $FreeBSD$ PORTNAME= mafft -PORTVERSION= 7.149 +PORTVERSION= 7.221 CATEGORIES= biology MASTER_SITES= http://mafft.cbrc.jp/alignment/software/ DISTNAME= ${PORTNAME}-${PORTVERSION}-without-extensions-src @@ -19,14 +19,14 @@ BUILD_WRKSRC= ${WRKSRC}/core USES= gmake shebangfix tar:tgz -SHEBANG_FILES= core/mafftash_premafft.tmpl +SHEBANG_FILES= core/mafftash_premafft.tmpl core/seekquencer_premafft.tmpl LIBEXEC_FILES= dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign \ pair2hat3s multi2hat3s pairash addsingle splittbfast \ disttbfast tbfast mafft-profile f2cl mccaskillwrap contrafoldwrap \ countlen seq2regtable regtable2seq score getlag dndpre \ setcore replaceu restoreu setdirection makedirectionlist version -PERL_LIBEXEC_FILES= mafftash_premafft.pl +PERL_LIBEXEC_FILES= mafftash_premafft.pl seekquencer_premafft.pl SCRIPT_FILES= mafft mafft-homologs.rb LN_FILES= einsi fftns fftnsi ginsi linsi mafft-einsi mafft-fftns \ mafft-fftnsi mafft-ginsi mafft-linsi mafft-nwns mafft-nwnsi \ diff --git a/biology/mafft/distinfo b/biology/mafft/distinfo index 6c04f2612fe6..199a7bc6e942 100644 --- a/biology/mafft/distinfo +++ b/biology/mafft/distinfo @@ -1,2 +1,2 @@ -SHA256 (mafft-7.149-without-extensions-src.tgz) = cfd909ee28afcc191f99c7ca37a507ddbefe9fbc416ef5692528c68a60c7b29a -SIZE (mafft-7.149-without-extensions-src.tgz) = 373846 +SHA256 (mafft-7.221-without-extensions-src.tgz) = 6d9cdcc04684c8c8ff61888dffc0396b48c713e4519a99f54e04c4a7179d2776 +SIZE (mafft-7.221-without-extensions-src.tgz) = 376075 diff --git a/biology/mafft/pkg-plist b/biology/mafft/pkg-plist index 3bb0b782df32..bc0982b4d887 100644 --- a/biology/mafft/pkg-plist +++ b/biology/mafft/pkg-plist @@ -41,6 +41,7 @@ libexec/mafft/regtable2seq libexec/mafft/replaceu libexec/mafft/restoreu libexec/mafft/score +libexec/mafft/seekquencer_premafft.pl libexec/mafft/seq2regtable libexec/mafft/setcore libexec/mafft/setdirection @@ -53,13 +54,11 @@ man/man1/mafft.1.gz %%PORTDOCS%%%%DOCSDIR%%/license %%PORTDOCS%%%%DOCSDIR%%/readme %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.allowshift %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.dpparttree %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.fftns2 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.fftnsi %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.gins1 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.ginsi -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.ginsi.allowshift %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.lins1 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.linsi %%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample.parttree |