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authorJohann Visagie <wjv@FreeBSD.org>2001-08-06 13:07:46 +0000
committerJohann Visagie <wjv@FreeBSD.org>2001-08-06 13:07:46 +0000
commit199894f6563276e6808887ed84a724e3615a1a85 (patch)
treef162153436d20a386465a8d0492f28de00cf4446 /biology/migrate
parent12bfc0ee3ee1c847bb613333ac6c7b96e87be967 (diff)
downloadports-199894f6563276e6808887ed84a724e3615a1a85.tar.gz
ports-199894f6563276e6808887ed84a724e3615a1a85.zip
Notes
Diffstat (limited to 'biology/migrate')
-rw-r--r--biology/migrate/Makefile34
-rw-r--r--biology/migrate/distinfo1
-rw-r--r--biology/migrate/pkg-comment1
-rw-r--r--biology/migrate/pkg-descr14
-rw-r--r--biology/migrate/pkg-plist12
5 files changed, 62 insertions, 0 deletions
diff --git a/biology/migrate/Makefile b/biology/migrate/Makefile
new file mode 100644
index 000000000000..730c5b452c72
--- /dev/null
+++ b/biology/migrate/Makefile
@@ -0,0 +1,34 @@
+# New ports collection makefile for: migrate
+# Date created: 6 August 2001
+# Whom: Johann Visagie <wjv@FreeBSD.org>
+#
+# $FreeBSD$
+#
+
+PORTNAME= migrate
+PORTVERSION= 1.2
+CATEGORIES= biology
+MASTER_SITES= ftp://evolution.genetics.washington.edu/pub/lamarc/migrate/
+DISTNAME= ${PORTNAME}-${PORTVERSION}.src
+
+MAINTAINER= wjv@FreeBSD.org
+
+WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION}
+CONFIGURE_WRKSRC= ${WRKSRC}/src
+BUILD_WRKSRC= ${CONFIGURE_WRKSRC}
+INSTALL_WRKSRC= ${CONFIGURE_WRKSRC}
+GNU_CONFIGURE= yes
+
+MAN1= migrate.1
+
+post-install:
+ @ cd ${PREFIX}/bin && ${LN} -s migrate-n migrate
+.if !defined(NOPORTDOCS)
+ @ ${MKDIR} ${DOCSDIR}/graphics
+.for docfile in HISTORY HOWTO-PARALLEL README migrate.html
+ @ ${INSTALL_DATA} ${WRKSRC}/${docfile} ${DOCSDIR}
+.endfor
+ @ ${INSTALL_DATA} ${WRKSRC}/graphics/* ${DOCSDIR}/graphics
+.endif
+
+.include <bsd.port.mk>
diff --git a/biology/migrate/distinfo b/biology/migrate/distinfo
new file mode 100644
index 000000000000..bb6fc4fbd1f9
--- /dev/null
+++ b/biology/migrate/distinfo
@@ -0,0 +1 @@
+MD5 (migrate-1.2.src.tar.gz) = 697d75319a1b9fc75db59264691b8e43
diff --git a/biology/migrate/pkg-comment b/biology/migrate/pkg-comment
new file mode 100644
index 000000000000..1cf2d7f16689
--- /dev/null
+++ b/biology/migrate/pkg-comment
@@ -0,0 +1 @@
+A program to estimate population sizes and migration rates
diff --git a/biology/migrate/pkg-descr b/biology/migrate/pkg-descr
new file mode 100644
index 000000000000..126648f42468
--- /dev/null
+++ b/biology/migrate/pkg-descr
@@ -0,0 +1,14 @@
+Migrate estimates effective population sizes and past migration rates between
+two or "n" populations assuming a migration matrix model with asymmetric
+migration rates and different subpopulation sizes. The n-population migrate
+can use sequence data, microsatellite data or electrophoretic data.
+
+Migrate forms part of the Lamarc (Likelihood Analysis with Metropolis
+Algorithm using Random Coalescence) suite. See:
+
+ http://evolution.genetics.washington.edu/lamarc.html
+
+Author: Peter Beerli <beerli@genetics.washington.edu>
+WWW: http://evolution.genetics.washington.edu/lamarc/migrate.html
+
+-- Johann Visagie <johann@FreeBSD.org>
diff --git a/biology/migrate/pkg-plist b/biology/migrate/pkg-plist
new file mode 100644
index 000000000000..ff43dc3f9d5b
--- /dev/null
+++ b/biology/migrate/pkg-plist
@@ -0,0 +1,12 @@
+bin/migrate
+bin/migrate-n
+%%PORTDOCS%%share/doc/migrate/HISTORY
+%%PORTDOCS%%share/doc/migrate/HOWTO-PARALLEL
+%%PORTDOCS%%share/doc/migrate/README
+%%PORTDOCS%%share/doc/migrate/graphics/librarian.gif
+%%PORTDOCS%%share/doc/migrate/graphics/mail.gif
+%%PORTDOCS%%share/doc/migrate/graphics/migrate.gif
+%%PORTDOCS%%share/doc/migrate/graphics/packet.gif
+%%PORTDOCS%%share/doc/migrate/migrate.html
+%%PORTDOCS%%@dirrm share/doc/migrate/graphics
+%%PORTDOCS%%@dirrm share/doc/migrate