4 files changed, 66 insertions, 0 deletions

diff --git a/biology/p5-Bio-FeatureIO/Makefile b/biology/p5-Bio-FeatureIO/Makefile
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+++ b/biology/p5-Bio-FeatureIO/Makefile
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+# Created by: Po-Chuan Hsieh <sunpoet@FreeBSD.org>
+# $FreeBSD$
+
+PORTNAME=	Bio-FeatureIO
+PORTVERSION=	1.6.905
+CATEGORIES=	biology perl5
+MASTER_SITES=	CPAN
+PKGNAMEPREFIX=	p5-
+
+MAINTAINER=	sunpoet@FreeBSD.org
+COMMENT=	Handler for FeatureIO
+
+LICENSE=	ART10 GPLv1+
+LICENSE_COMB=	dual
+LICENSE_FILE=	${WRKSRC}/LICENSE
+
+BUILD_DEPENDS=	p5-BioPerl>=0:biology/p5-BioPerl \
+		p5-Tree-DAG_Node>=0:devel/p5-Tree-DAG_Node \
+		p5-URI>=0:net/p5-URI \
+		p5-XML-DOM>=0:textproc/p5-XML-DOM \
+		p5-XML-DOM-XPath>=0:textproc/p5-XML-DOM-XPath
+RUN_DEPENDS:=	${BUILD_DEPENDS}
+
+NO_ARCH=	yes
+USE_PERL5=	configure
+USES=		perl5
+
+.include <bsd.port.mk>
diff --git a/biology/p5-Bio-FeatureIO/distinfo b/biology/p5-Bio-FeatureIO/distinfo
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+++ b/biology/p5-Bio-FeatureIO/distinfo
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+TIMESTAMP = 1505488503
+SHA256 (Bio-FeatureIO-1.6.905.tar.gz) = 322e5757b374f2fb90b8f20bdbdc75631f5cb4d122f81a4d35c3a177cf950c7a
+SIZE (Bio-FeatureIO-1.6.905.tar.gz) = 54906
diff --git a/biology/p5-Bio-FeatureIO/pkg-descr b/biology/p5-Bio-FeatureIO/pkg-descr
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+++ b/biology/p5-Bio-FeatureIO/pkg-descr
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+Bio::FeatureIO is an iterator subsystem for genomic sequence features.
+
+Bio::FeatureIO is a handler module for the formats in the FeatureIO set (eg,
+Bio::FeatureIO::GFF). It is the officially sanctioned way of getting at the
+format objects, which most people should use.
+
+The Bio::FeatureIO system can be thought of like biological file handles. They
+are attached to filehandles with smart formatting rules (eg, GFF format, or BED
+format) and can either read or write feature objects (Bio::SeqFeature objects,
+or more correctly, Bio::FeatureHolderI implementing objects, of which
+Bio::SeqFeature is one such object). If you want to know what to do with a
+Bio::SeqFeatureI object, read Bio::SeqFeatureI.
+
+The idea is that you request a stream object for a particular format. All the
+stream objects have a notion of an internal file that is read from or written
+to. A particular FeatureIO object instance is configured for either input or
+output. A specific example of a stream object is the Bio::FeatureIO::gff object.
+
+WWW: http://search.cpan.org/dist/Bio-FeatureIO/
diff --git a/biology/p5-Bio-FeatureIO/pkg-plist b/biology/p5-Bio-FeatureIO/pkg-plist
new file mode 100644
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+++ b/biology/p5-Bio-FeatureIO/pkg-plist
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+%%SITE_PERL%%/Bio/FeatureIO.pm
+%%SITE_PERL%%/Bio/FeatureIO/bed.pm
+%%SITE_PERL%%/Bio/FeatureIO/gff.pm
+%%SITE_PERL%%/Bio/FeatureIO/gtf.pm
+%%SITE_PERL%%/Bio/FeatureIO/interpro.pm
+%%SITE_PERL%%/Bio/FeatureIO/ptt.pm
+%%SITE_PERL%%/Bio/FeatureIO/vecscreen_simple.pm
+%%SITE_PERL%%/Bio/SeqFeature/Annotated.pm
+%%PERL5_MAN3%%/Bio::FeatureIO.3.gz
+%%PERL5_MAN3%%/Bio::FeatureIO::bed.3.gz
+%%PERL5_MAN3%%/Bio::FeatureIO::gff.3.gz
+%%PERL5_MAN3%%/Bio::FeatureIO::gtf.3.gz
+%%PERL5_MAN3%%/Bio::FeatureIO::interpro.3.gz
+%%PERL5_MAN3%%/Bio::FeatureIO::ptt.3.gz
+%%PERL5_MAN3%%/Bio::FeatureIO::vecscreen_simple.3.gz
+%%PERL5_MAN3%%/Bio::SeqFeature::Annotated.3.gz