1 files changed, 0 insertions, 156 deletions

diff --git a/biology/p5-bioperl/pkg-plist b/biology/p5-bioperl/pkg-plist
index 2fb88f2cc33f..1203eb08e68d 100644
--- a/biology/p5-bioperl/pkg-plist
+++ b/biology/p5-bioperl/pkg-plist
@@ -1937,159 +1937,3 @@ man/man1/bp_unflatten_seq.pl.1.gz
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/tools/seq_pattern.pl
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/tools/standaloneblast.pl
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/tree/paup2phylip.pl
-@dirrm %%SITE_PERL%%/Bio/Align
-@dirrm %%SITE_PERL%%/Bio/AlignIO/Handler
-@dirrm %%SITE_PERL%%/Bio/AlignIO
-@dirrm %%SITE_PERL%%/Bio/Annotation
-@dirrm %%SITE_PERL%%/Bio/Assembly/IO
-@dirrm %%SITE_PERL%%/Bio/Assembly/Tools
-@dirrm %%SITE_PERL%%/Bio/Assembly
-@dirrm %%SITE_PERL%%/Bio/Cluster
-@dirrm %%SITE_PERL%%/Bio/ClusterIO
-@dirrm %%SITE_PERL%%/Bio/CodonUsage
-@dirrm %%SITE_PERL%%/Bio/Coordinate/Result
-@dirrm %%SITE_PERL%%/Bio/Coordinate
-@dirrm %%SITE_PERL%%/Bio/DB/Expression
-@dirrm %%SITE_PERL%%/Bio/DB/Flat/BDB
-@dirrm %%SITE_PERL%%/Bio/DB/Flat
-@dirrm %%SITE_PERL%%/Bio/DB/GFF/Adaptor/berkeleydb
-@dirrm %%SITE_PERL%%/Bio/DB/GFF/Adaptor/dbi
-@dirrm %%SITE_PERL%%/Bio/DB/GFF/Adaptor/memory
-@dirrm %%SITE_PERL%%/Bio/DB/GFF/Adaptor
-@dirrm %%SITE_PERL%%/Bio/DB/GFF/Aggregator
-@dirrm %%SITE_PERL%%/Bio/DB/GFF/Util
-@dirrm %%SITE_PERL%%/Bio/DB/GFF
-@dirrm %%SITE_PERL%%/Bio/DB/HIV
-@dirrm %%SITE_PERL%%/Bio/DB/Query
-@dirrm %%SITE_PERL%%/Bio/DB/SeqFeature/Store/DBI
-@dirrm %%SITE_PERL%%/Bio/DB/SeqFeature/Store
-@dirrm %%SITE_PERL%%/Bio/DB/SeqFeature
-@dirrm %%SITE_PERL%%/Bio/DB/SeqVersion
-@dirrm %%SITE_PERL%%/Bio/DB/TFBS
-@dirrm %%SITE_PERL%%/Bio/DB/Taxonomy
-@dirrm %%SITE_PERL%%/Bio/DB
-@dirrm %%SITE_PERL%%/Bio/Das
-@dirrm %%SITE_PERL%%/Bio/Draw
-@dirrm %%SITE_PERL%%/Bio/Event
-@dirrm %%SITE_PERL%%/Bio/Factory
-@dirrm %%SITE_PERL%%/Bio/Index
-@dirrm %%SITE_PERL%%/Bio/LiveSeq/IO
-@dirrm %%SITE_PERL%%/Bio/LiveSeq
-@dirrm %%SITE_PERL%%/Bio/Location
-@dirrm %%SITE_PERL%%/Bio/Map
-@dirrm %%SITE_PERL%%/Bio/MapIO
-@dirrm %%SITE_PERL%%/Bio/Matrix/IO
-@dirrm %%SITE_PERL%%/Bio/Matrix/PSM/IO
-@dirrm %%SITE_PERL%%/Bio/Matrix/PSM
-@dirrm %%SITE_PERL%%/Bio/Matrix
-@dirrm %%SITE_PERL%%/Bio/MolEvol
-@dirrm %%SITE_PERL%%/Bio/Nexml
-@dirrm %%SITE_PERL%%/Bio/Ontology/SimpleGOEngine
-@dirrm %%SITE_PERL%%/Bio/Ontology
-@dirrm %%SITE_PERL%%/Bio/OntologyIO/Handlers
-@dirrm %%SITE_PERL%%/Bio/OntologyIO
-@dirrm %%SITE_PERL%%/Bio/Phenotype/MeSH
-@dirrm %%SITE_PERL%%/Bio/Phenotype/OMIM
-@dirrm %%SITE_PERL%%/Bio/Phenotype
-@dirrm %%SITE_PERL%%/Bio/PhyloNetwork
-@dirrm %%SITE_PERL%%/Bio/PopGen/IO
-@dirrm %%SITE_PERL%%/Bio/PopGen/Simulation
-@dirrm %%SITE_PERL%%/Bio/PopGen
-@dirrm %%SITE_PERL%%/Bio/Restriction/Enzyme
-@dirrm %%SITE_PERL%%/Bio/Restriction/IO
-@dirrm %%SITE_PERL%%/Bio/Restriction
-@dirrm %%SITE_PERL%%/Bio/Root
-@dirrm %%SITE_PERL%%/Bio/Search/HSP
-@dirrm %%SITE_PERL%%/Bio/Search/Hit
-@dirrm %%SITE_PERL%%/Bio/Search/Iteration
-@dirrm %%SITE_PERL%%/Bio/Search/Result
-@dirrm %%SITE_PERL%%/Bio/Search/Tiling
-@dirrm %%SITE_PERL%%/Bio/Search
-@dirrm %%SITE_PERL%%/Bio/SearchIO/Writer
-@dirrm %%SITE_PERL%%/Bio/SearchIO/XML
-@dirrm %%SITE_PERL%%/Bio/SearchIO
-@dirrm %%SITE_PERL%%/Bio/Seq/Meta
-@dirrm %%SITE_PERL%%/Bio/Seq
-@dirrm %%SITE_PERL%%/Bio/SeqEvolution
-@dirrm %%SITE_PERL%%/Bio/SeqFeature/Gene
-@dirrm %%SITE_PERL%%/Bio/SeqFeature/SiRNA
-@dirrm %%SITE_PERL%%/Bio/SeqFeature/Tools
-@dirrm %%SITE_PERL%%/Bio/SeqFeature
-@dirrm %%SITE_PERL%%/Bio/SeqIO/Handler
-@dirrm %%SITE_PERL%%/Bio/SeqIO/game
-@dirrm %%SITE_PERL%%/Bio/SeqIO/tinyseq
-@dirrm %%SITE_PERL%%/Bio/SeqIO
-@dirrm %%SITE_PERL%%/Bio/Structure/IO
-@dirrm %%SITE_PERL%%/Bio/Structure/SecStr/DSSP
-@dirrm %%SITE_PERL%%/Bio/Structure/SecStr/STRIDE
-@dirrm %%SITE_PERL%%/Bio/Structure/SecStr
-@dirrm %%SITE_PERL%%/Bio/Structure
-@dirrm %%SITE_PERL%%/Bio/Symbol
-@dirrm %%SITE_PERL%%/Bio/Taxonomy
-@dirrm %%SITE_PERL%%/Bio/Tools/Alignment
-@dirrm %%SITE_PERL%%/Bio/Tools/Analysis/DNA
-@dirrm %%SITE_PERL%%/Bio/Tools/Analysis/Protein
-@dirrm %%SITE_PERL%%/Bio/Tools/Analysis
-@dirrm %%SITE_PERL%%/Bio/Tools/EMBOSS
-@dirrm %%SITE_PERL%%/Bio/Tools/HMMER
-@dirrm %%SITE_PERL%%/Bio/Tools/Phylo/Molphy
-@dirrm %%SITE_PERL%%/Bio/Tools/Phylo/PAML
-@dirrm %%SITE_PERL%%/Bio/Tools/Phylo/Phylip
-@dirrm %%SITE_PERL%%/Bio/Tools/Phylo
-@dirrm %%SITE_PERL%%/Bio/Tools/Prediction
-@dirrm %%SITE_PERL%%/Bio/Tools/Primer/Assessor
-@dirrm %%SITE_PERL%%/Bio/Tools/Primer
-@dirrm %%SITE_PERL%%/Bio/Tools/Run/WrapperBase
-@dirrm %%SITE_PERL%%/Bio/Tools/Run
-@dirrm %%SITE_PERL%%/Bio/Tools/SeqPattern
-@dirrm %%SITE_PERL%%/Bio/Tools/SiRNA/Ruleset
-@dirrm %%SITE_PERL%%/Bio/Tools/SiRNA
-@dirrm %%SITE_PERL%%/Bio/Tools/Signalp
-@dirrm %%SITE_PERL%%/Bio/Tools/Sim4
-@dirrm %%SITE_PERL%%/Bio/Tools/Spidey
-@dirrm %%SITE_PERL%%/Bio/Tools
-@dirrm %%SITE_PERL%%/Bio/Tree/Draw
-@dirrm %%SITE_PERL%%/Bio/Tree
-@dirrm %%SITE_PERL%%/Bio/TreeIO
-@dirrm %%SITE_PERL%%/Bio/Variation/IO
-@dirrm %%SITE_PERL%%/Bio/Variation
-@dirrm %%DATADIR%%/models
-@dirrm %%DATADIR%%/scripts/Bio-DB-GFF
-@dirrm %%DATADIR%%/scripts/Bio-DB-SeqFeature-Store
-@dirrm %%DATADIR%%/scripts/DB
-@dirrm %%DATADIR%%/scripts/DB-HIV
-@dirrm %%DATADIR%%/scripts/das
-@dirrm %%DATADIR%%/scripts/index
-@dirrm %%DATADIR%%/scripts/popgen
-@dirrm %%DATADIR%%/scripts/searchio
-@dirrm %%DATADIR%%/scripts/seq
-@dirrm %%DATADIR%%/scripts/seqstats
-@dirrm %%DATADIR%%/scripts/taxa
-@dirrm %%DATADIR%%/scripts/tree
-@dirrm %%DATADIR%%/scripts/utilities
-@dirrm %%DATADIR%%/scripts
-@dirrm %%DATADIR%%
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/doc/Deobfuscator/bin
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/doc/Deobfuscator/cgi-bin
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/doc/Deobfuscator/lib
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/doc/Deobfuscator/t
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/doc/Deobfuscator
-%%PORTDOCS%%@dirrm %%DOCSDIR%%/doc
-%%PORTDOCS%%@dirrm %%DOCSDIR%%
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/Bio-DB-GFF
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/align
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/cluster
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/contributed
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/db
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/liveseq
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/popgen
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/quality
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/root/lib
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/root
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/searchio
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/sirna
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/structure
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/tk
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/tools
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/tree
-%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%