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author | Dmitry Marakasov <amdmi3@FreeBSD.org> | 2016-05-19 10:21:23 +0000 |
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committer | Dmitry Marakasov <amdmi3@FreeBSD.org> | 2016-05-19 10:21:23 +0000 |
commit | 1d1f878054efdd1171a8cb006e59ad0727610293 (patch) | |
tree | e4434b89d2dbba884e57f6a6cd3c7fc294554ccf /biology/paml/pkg-descr | |
parent | 43b793a6f26531f807a7b7c16a1db3bf6b53f26d (diff) |
Notes
Diffstat (limited to 'biology/paml/pkg-descr')
-rw-r--r-- | biology/paml/pkg-descr | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/biology/paml/pkg-descr b/biology/paml/pkg-descr index e0fa64554306..142aea337cd7 100644 --- a/biology/paml/pkg-descr +++ b/biology/paml/pkg-descr @@ -2,7 +2,7 @@ Phylogenetic Analysis by Maximum Likelihood (PAML) PAML is a program package for phylogenetic analyses of DNA or protein sequences using maximum likelihood, and is maintained and distributed -by Ziheng Yang. +by Ziheng Yang. Possible uses of the programs are: - Estimation of branch lengths in a phylogenetic tree and parameters @@ -14,9 +14,9 @@ Possible uses of the programs are: constancy and independence among nucleotide or amino acid sites, rate constancy among lineages (the molecular clock), and homogeneity of evolutionary process in multiple genes; -- Calculation of substitution rates at sites; +- Calculation of substitution rates at sites; - Reconstruction of ancestral nucleotide or amino acid sequences; -- Simulation of nucleotide, codon, and amino acid sequence data sets; -- Phylogenetic tree reconstruction by maximum likelihood and Bayesian methods. +- Simulation of nucleotide, codon, and amino acid sequence data sets; +- Phylogenetic tree reconstruction by maximum likelihood and Bayesian methods. WWW: http://abacus.gene.ucl.ac.uk/software/paml.html |