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authorDmitry Marakasov <amdmi3@FreeBSD.org>2016-05-19 10:21:23 +0000
committerDmitry Marakasov <amdmi3@FreeBSD.org>2016-05-19 10:21:23 +0000
commit1d1f878054efdd1171a8cb006e59ad0727610293 (patch)
treee4434b89d2dbba884e57f6a6cd3c7fc294554ccf /biology/paml/pkg-descr
parent43b793a6f26531f807a7b7c16a1db3bf6b53f26d (diff)
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@@ -2,7 +2,7 @@ Phylogenetic Analysis by Maximum Likelihood (PAML)
PAML is a program package for phylogenetic analyses of DNA or protein
sequences using maximum likelihood, and is maintained and distributed
-by Ziheng Yang.
+by Ziheng Yang.
Possible uses of the programs are:
- Estimation of branch lengths in a phylogenetic tree and parameters
@@ -14,9 +14,9 @@ Possible uses of the programs are:
constancy and independence among nucleotide or amino acid sites, rate
constancy among lineages (the molecular clock), and homogeneity of
evolutionary process in multiple genes;
-- Calculation of substitution rates at sites;
+- Calculation of substitution rates at sites;
- Reconstruction of ancestral nucleotide or amino acid sequences;
-- Simulation of nucleotide, codon, and amino acid sequence data sets;
-- Phylogenetic tree reconstruction by maximum likelihood and Bayesian methods.
+- Simulation of nucleotide, codon, and amino acid sequence data sets;
+- Phylogenetic tree reconstruction by maximum likelihood and Bayesian methods.
WWW: http://abacus.gene.ucl.ac.uk/software/paml.html