diff options
| author | Tijl Coosemans <tijl@FreeBSD.org> | 2014-02-16 17:15:31 +0000 |
|---|---|---|
| committer | Tijl Coosemans <tijl@FreeBSD.org> | 2014-02-16 17:15:31 +0000 |
| commit | 564a799c7173c288d4d3a9be78ac3d2db983d512 (patch) | |
| tree | 49e521faa408bc4bd163bfb0febf91e262772c1c /biology/plink | |
| parent | af1790bfbbcd5831281907db9c04f3776b8d601c (diff) | |
| download | ports-564a799c7173c288d4d3a9be78ac3d2db983d512.tar.gz ports-564a799c7173c288d4d3a9be78ac3d2db983d512.zip | |
Notes
Diffstat (limited to 'biology/plink')
| -rw-r--r-- | biology/plink/Makefile | 13 | ||||
| -rw-r--r-- | biology/plink/files/patch-Makefile | 9 |
2 files changed, 11 insertions, 11 deletions
diff --git a/biology/plink/Makefile b/biology/plink/Makefile index bfd37ec1e825..a9711e69d1b5 100644 --- a/biology/plink/Makefile +++ b/biology/plink/Makefile @@ -3,10 +3,11 @@ PORTNAME= plink PORTVERSION= 1.07 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= biology science MASTER_SITES= http://pngu.mgh.harvard.edu/~purcell/plink/dist/ DISTNAME= ${PORTNAME}-${PORTVERSION}-src +EXTRACT_SUFX= .zip MAINTAINER= jwbacon@tds.net COMMENT= Whole genome association analysis toolset @@ -15,15 +16,13 @@ LICENSE= GPLv2 LIB_DEPENDS= liblapack.so:${PORTSDIR}/math/lapack -USES= gmake -USE_ZIP= yes -USE_FORTRAN= yes # Make it use the same compiler as lapack +# We need Fortran LDFLAGS to link with Lapack. +USES= fortran gmake PLIST_FILES= bin/plink -NO_STAGE= yes do-install: - ${MKDIR} ${PREFIX}/bin - ${INSTALL_PROGRAM} ${WRKSRC}/plink ${PREFIX}/bin + ${MKDIR} ${STAGEDIR}${PREFIX}/bin + ${INSTALL_PROGRAM} ${WRKSRC}/plink ${STAGEDIR}${PREFIX}/bin .include <bsd.port.mk> diff --git a/biology/plink/files/patch-Makefile b/biology/plink/files/patch-Makefile index cb1e7f5fc537..e98b69aa6559 100644 --- a/biology/plink/files/patch-Makefile +++ b/biology/plink/files/patch-Makefile @@ -1,15 +1,16 @@ --- Makefile.orig 2009-10-10 11:00:20.000000000 -0500 +++ Makefile 2012-09-07 08:24:26.000000000 -0500 -@@ -26,7 +26,7 @@ +@@ -26,25 +26,25 @@ WITH_WEBCHECK = 1 FORCE_32BIT = WITH_ZLIB = 1 -WITH_LAPACK = +-FORCE_DYNAMIC = +WITH_LAPACK = 1 - FORCE_DYNAMIC = ++FORCE_DYNAMIC = 1 # Put C++ compiler here; Windows has it's own specific version -@@ -34,17 +34,17 @@ + CXX_UNIX = g++ CXX_WIN = c:\bin\mingw\bin\mingw32-g++.exe # Any other compiler flags here ( -Wall, -g, etc) @@ -18,7 +19,7 @@ # Misc -LIB_LAPACK = /usr/lib/liblapack.so.3 -+LIB_LAPACK = -L${LOCALBASE}/lib -llapack -lblas -lgfortran ++LIB_LAPACK = ${LDFLAGS} -L${LOCALBASE}/lib -llapack -lblas # -------------------------------------------------------------------- |