diff options
| author | Max Brazhnikov <makc@FreeBSD.org> | 2012-09-27 09:59:25 +0000 |
|---|---|---|
| committer | Max Brazhnikov <makc@FreeBSD.org> | 2012-09-27 09:59:25 +0000 |
| commit | ecd280d8207b5c7d43c785405a3aff5b7781710c (patch) | |
| tree | 79b7d185429befe9c68006cc1d45ecc88edb7776 /biology/plinkseq | |
| parent | 47ad784422cc954b19911e16ba628e7d2b6db88e (diff) | |
| download | ports-ecd280d8207b5c7d43c785405a3aff5b7781710c.tar.gz ports-ecd280d8207b5c7d43c785405a3aff5b7781710c.zip | |
Notes
Diffstat (limited to 'biology/plinkseq')
| -rw-r--r-- | biology/plinkseq/Makefile | 28 | ||||
| -rw-r--r-- | biology/plinkseq/distinfo | 2 | ||||
| -rw-r--r-- | biology/plinkseq/pkg-descr | 8 | ||||
| -rw-r--r-- | biology/plinkseq/pkg-plist | 12 |
4 files changed, 50 insertions, 0 deletions
diff --git a/biology/plinkseq/Makefile b/biology/plinkseq/Makefile new file mode 100644 index 000000000000..7870f3024291 --- /dev/null +++ b/biology/plinkseq/Makefile @@ -0,0 +1,28 @@ +# Created by: Jason Bacon <jwbacon@tds.net> +# $FreeBSD$ + +PORTNAME= plinkseq +PORTVERSION= 0.08 +CATEGORIES= biology science +MASTER_SITES= http://atgu.mgh.harvard.edu/${PORTNAME}/dist/version-${PORTVERSION}/ + +MAINTAINER= jwbacon@tds.net +COMMENT= Toolset for working with human genetic variation data + +LICENSE= GPLv2 + +LIB_DEPENDS= protobuf:${PORTSDIR}/devel/protobuf + +USE_DOS2UNIX= yes +USE_LDCONFIG= yes +GNU_CONFIGURE= yes +CONFIGURE_ARGS+=--with-protobuf=${LOCALBASE} + +post-patch: + ${REINPLACE_CMD} -e 's|PF_INET|AF_INET|g' ${WRKSRC}/browser/mongoose.c + ${REINPLACE_CMD} -e 's|-ldl||g' \ + ${WRKSRC}/browser/Makefile.in \ + ${WRKSRC}/client/Makefile.in \ + ${WRKSRC}/index/Makefile.in + +.include <bsd.port.mk> diff --git a/biology/plinkseq/distinfo b/biology/plinkseq/distinfo new file mode 100644 index 000000000000..daeff2173c24 --- /dev/null +++ b/biology/plinkseq/distinfo @@ -0,0 +1,2 @@ +SHA256 (plinkseq-0.08.tar.gz) = 6bde88925a82a79c6fa2401a197865cf6d659163fd5f11c5fb426701b54bb24f +SIZE (plinkseq-0.08.tar.gz) = 2991871 diff --git a/biology/plinkseq/pkg-descr b/biology/plinkseq/pkg-descr new file mode 100644 index 000000000000..1d7356738a2a --- /dev/null +++ b/biology/plinkseq/pkg-descr @@ -0,0 +1,8 @@ +PLINK/SEQ is an open-source C/C++ library for working with human +genetic variation data. The specific focus is to provide a platform +for analytic tool development for variation data from large-scale +resequencing and genotyping projects, particularly whole-exome and +whole-genome studies. It is independent of (but designed to be +complementary to) the existing PLINK package. + +WWW: http://atgu.mgh.harvard.edu/plinkseq/ diff --git a/biology/plinkseq/pkg-plist b/biology/plinkseq/pkg-plist new file mode 100644 index 000000000000..a277471b3498 --- /dev/null +++ b/biology/plinkseq/pkg-plist @@ -0,0 +1,12 @@ +bin/behead +bin/gcol +bin/index +bin/index.cgi +bin/mongoose +bin/pbrowse +bin/pbrowse.cgi +bin/pseq +bin/tab2vcf +lib/libplinkseq.la +lib/libplinkseq.so +lib/libplinkseq.so.0 |