1 files changed, 360 insertions, 0 deletions

diff --git a/biology/primer3/pkg-plist b/biology/primer3/pkg-plist
new file mode 100644
index 000000000000..5a1733ccc9c0
--- /dev/null
+++ b/biology/primer3/pkg-plist
@@ -0,0 +1,360 @@
+%%PORTDOCS%%share/doc/primer3/README
+%%PORTDOCS%%share/doc/primer3/example
+%%PORTDOCS%%share/examples/primer3/dpal_gen.pl
+%%PORTDOCS%%share/examples/primer3/dpal_input
+%%PORTDOCS%%share/examples/primer3/dpal_long_input
+%%PORTDOCS%%share/examples/primer3/dpal_long_score_output
+%%PORTDOCS%%share/examples/primer3/dpal_output
+%%PORTDOCS%%share/examples/primer3/dpal_score_output
+%%PORTDOCS%%share/examples/primer3/dpal_test.pl
+%%PORTDOCS%%share/examples/primer3/long_seq_input
+%%PORTDOCS%%share/examples/primer3/long_seq_output
+%%PORTDOCS%%share/examples/primer3/not_for_production.lib
+%%PORTDOCS%%share/examples/primer3/primer1_input
+%%PORTDOCS%%share/examples/primer3/primer1_list_last/AGAG.for
+%%PORTDOCS%%share/examples/primer3/primer1_list_last/AGAG.rev
+%%PORTDOCS%%share/examples/primer3/primer1_list_last/SP01-02.txt.for
+%%PORTDOCS%%share/examples/primer3/primer1_list_last/SP01-02.txt.rev
+%%PORTDOCS%%share/examples/primer3/primer1_list_last/SP01-03.txt.for
+%%PORTDOCS%%share/examples/primer3/primer1_list_last/SP01-03.txt.rev
+%%PORTDOCS%%share/examples/primer3/primer1_list_last/SP01-06.txt.for
+%%PORTDOCS%%share/examples/primer3/primer1_list_last/SP01-06.txt.rev
+%%PORTDOCS%%share/examples/primer3/primer1_list_last/SP01-19.txt.for
+%%PORTDOCS%%share/examples/primer3/primer1_list_last/SP01-19.txt.rev
+%%PORTDOCS%%share/examples/primer3/primer1_list_last/SP01-21.txt.for
+%%PORTDOCS%%share/examples/primer3/primer1_list_last/SP01-21.txt.rev
+%%PORTDOCS%%share/examples/primer3/primer1_list_last/SP04-07.txt.for
+%%PORTDOCS%%share/examples/primer3/primer1_list_last/SP04-07.txt.rev
+%%PORTDOCS%%share/examples/primer3/primer1_list_last/included_test.for
+%%PORTDOCS%%share/examples/primer3/primer1_list_last/included_test.rev
+%%PORTDOCS%%share/examples/primer3/primer1_list_last/included_test_w_middle.for
+%%PORTDOCS%%share/examples/primer3/primer1_list_last/included_test_w_middle.int
+%%PORTDOCS%%share/examples/primer3/primer1_list_last/long_seq.for
+%%PORTDOCS%%share/examples/primer3/primer1_list_last/included_test_w_middle.rev
+%%PORTDOCS%%share/examples/primer3/primer1_list_last/long_seq.rev
+%%PORTDOCS%%share/examples/primer3/primer1_list_last/targets_test.for
+%%PORTDOCS%%share/examples/primer3/primer1_list_last/targets_test.rev
+%%PORTDOCS%%share/examples/primer3/primer1_output
+%%PORTDOCS%%share/examples/primer3/primer_boundary1_formated_output
+%%PORTDOCS%%share/examples/primer3/primer_boundary1_input
+%%PORTDOCS%%share/examples/primer3/primer_boundary1_output
+%%PORTDOCS%%share/examples/primer3/primer_boundary_formated_output
+%%PORTDOCS%%share/examples/primer3/primer_boundary_input
+%%PORTDOCS%%share/examples/primer3/primer_boundary_output
+%%PORTDOCS%%share/examples/primer3/primer_check_input
+%%PORTDOCS%%share/examples/primer3/primer_check_output
+%%PORTDOCS%%share/examples/primer3/primer_end_pathology_input
+%%PORTDOCS%%share/examples/primer3/primer_end_pathology_output
+%%PORTDOCS%%share/examples/primer3/primer_global_err/MAX_PRIMER_LENGTH.in
+%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_dna_conc.in
+%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_float_1.in
+%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_float_2.in
+%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_float_3.in
+%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_float_4.in
+%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_gc_1.in
+%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_gc_2.in
+%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_gc_3.in
+%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_gc_int_1.in
+%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_gc_int_2.in
+%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_gc_int_3.in
+%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_num_ns.in
+%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_num_ns_int.in
+%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_product_sizes_1.in
+%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_product_sizes_2.in
+%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_product_sizes_3.in
+%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_product_sizes_4.in
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+%%PORTDOCS%%share/examples/primer3/primer_global_err/bad_self_end_int.in
+%%PORTDOCS%%share/examples/primer3/primer_global_err/empty_1.in
+%%PORTDOCS%%share/examples/primer3/primer_global_err/empty_product_size.in
+%%PORTDOCS%%share/examples/primer3/primer_global_err/gc_clamp_min_size.in
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+%%PORTDOCS%%share/examples/primer3/primer_global_err/no=.in
+%%PORTDOCS%%share/examples/primer3/primer_global_err/no_terminal=.in
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+%%PORTDOCS%%share/examples/primer3/primer_global_err/product_size_obj_fn.in
+%%PORTDOCS%%share/examples/primer3/primer_global_err/product_tm_obj_fn.in
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+%%PORTDOCS%%share/examples/primer3/primer_global_err/repeat_lib_int_err.in
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+%%PORTDOCS%%share/examples/primer3/primer_internal1_output
+%%PORTDOCS%%share/examples/primer3/primer_internal_formated_output
+%%PORTDOCS%%share/examples/primer3/primer_internal_input
+%%PORTDOCS%%share/examples/primer3/primer_internal_output
+%%PORTDOCS%%share/examples/primer3/primer_list_last/AGAG.for
+%%PORTDOCS%%share/examples/primer3/primer_list_last/AGAG.rev
+%%PORTDOCS%%share/examples/primer3/primer_list_last/SP01-02.txt.for
+%%PORTDOCS%%share/examples/primer3/primer_list_last/SP01-02.txt.rev
+%%PORTDOCS%%share/examples/primer3/primer_list_last/SP01-03.txt.for
+%%PORTDOCS%%share/examples/primer3/primer_list_last/SP01-03.txt.rev
+%%PORTDOCS%%share/examples/primer3/primer_list_last/SP01-06-with-repeat1.for
+%%PORTDOCS%%share/examples/primer3/primer_list_last/SP01-06-with-repeat1.int
+%%PORTDOCS%%share/examples/primer3/primer_list_last/SP01-06-with-repeat1.rev
+%%PORTDOCS%%share/examples/primer3/primer_list_last/SP01-06-with-repeat2.for
+%%PORTDOCS%%share/examples/primer3/primer_list_last/SP01-06-with-repeat2.int
+%%PORTDOCS%%share/examples/primer3/primer_list_last/SP01-06-with-repeat2.rev
+%%PORTDOCS%%share/examples/primer3/primer_list_last/SP01-06-with-repeat3.for
+%%PORTDOCS%%share/examples/primer3/primer_list_last/SP01-06-with-repeat3.int
+%%PORTDOCS%%share/examples/primer3/primer_list_last/SP01-06-with-repeat3.rev
+%%PORTDOCS%%share/examples/primer3/primer_list_last/SP01-06.txt.for
+%%PORTDOCS%%share/examples/primer3/primer_list_last/SP01-06.txt.rev
+%%PORTDOCS%%share/examples/primer3/primer_list_last/SP01-19.txt.for
+%%PORTDOCS%%share/examples/primer3/primer_list_last/SP01-19.txt.rev
+%%PORTDOCS%%share/examples/primer3/primer_list_last/SP01-21.txt.for
+%%PORTDOCS%%share/examples/primer3/primer_list_last/SP01-21.txt.rev
+%%PORTDOCS%%share/examples/primer3/primer_list_last/SP04-07.txt.for
+%%PORTDOCS%%share/examples/primer3/primer_list_last/SP04-07.txt.rev
+%%PORTDOCS%%share/examples/primer3/primer_list_last/case_problem_test.for
+%%PORTDOCS%%share/examples/primer3/primer_list_last/case_problem_test.rev
+%%PORTDOCS%%share/examples/primer3/primer_list_last/included_test.for
+%%PORTDOCS%%share/examples/primer3/primer_list_last/included_test.rev
+%%PORTDOCS%%share/examples/primer3/primer_list_last/included_test_w_middle.for
+%%PORTDOCS%%share/examples/primer3/primer_list_last/included_test_w_middle.int
+%%PORTDOCS%%share/examples/primer3/primer_list_last/included_test_w_middle.rev
+%%PORTDOCS%%share/examples/primer3/primer_list_last/long_seq.for
+%%PORTDOCS%%share/examples/primer3/primer_list_last/long_seq.rev
+%%PORTDOCS%%share/examples/primer3/primer_list_last/targets_test.for
+%%PORTDOCS%%share/examples/primer3/primer_list_last/targets_test.rev
+%%PORTDOCS%%share/examples/primer3/primer_mispriming_boundary1_formated_output
+%%PORTDOCS%%share/examples/primer3/primer_mispriming_boundary1_input
+%%PORTDOCS%%share/examples/primer3/primer_mispriming_boundary1_output
+%%PORTDOCS%%share/examples/primer3/primer_mispriming_boundary2_formated_output
+%%PORTDOCS%%share/examples/primer3/primer_mispriming_boundary2_input
+%%PORTDOCS%%share/examples/primer3/primer_mispriming_boundary2_output
+%%PORTDOCS%%share/examples/primer3/primer_mispriming_formated_output
+%%PORTDOCS%%share/examples/primer3/primer_mispriming_input
+%%PORTDOCS%%share/examples/primer3/primer_mispriming_long_lib_input
+%%PORTDOCS%%share/examples/primer3/primer_mispriming_long_lib_output
+%%PORTDOCS%%share/examples/primer3/primer_mispriming_output
+%%PORTDOCS%%share/examples/primer3/primer_must_use_formated_output
+%%PORTDOCS%%share/examples/primer3/primer_must_use_input
+%%PORTDOCS%%share/examples/primer3/primer_must_use_output
+%%PORTDOCS%%share/examples/primer3/primer_num_best_input
+%%PORTDOCS%%share/examples/primer3/primer_num_best_output
+%%PORTDOCS%%share/examples/primer3/primer_obj_fn_input
+%%PORTDOCS%%share/examples/primer3/primer_obj_fn_output
+%%PORTDOCS%%share/examples/primer3/primer_output
+%%PORTDOCS%%share/examples/primer3/primer_position_penalty_formated_output
+%%PORTDOCS%%share/examples/primer3/primer_position_penalty_input
+%%PORTDOCS%%share/examples/primer3/primer_position_penalty_output
+%%PORTDOCS%%share/examples/primer3/primer_quality_boundary_input
+%%PORTDOCS%%share/examples/primer3/primer_quality_boundary_output
+%%PORTDOCS%%share/examples/primer3/primer_rat_input
+%%PORTDOCS%%share/examples/primer3/primer_rat_output
+%%PORTDOCS%%share/examples/primer3/primer_repeat_boundary1_lib
+%%PORTDOCS%%share/examples/primer3/primer_repeat_boundary2_lib
+%%PORTDOCS%%share/examples/primer3/primer_repeat_long_lib
+%%PORTDOCS%%share/examples/primer3/primer_start_codon_input
+%%PORTDOCS%%share/examples/primer3/primer_start_codon_output
+%%PORTDOCS%%share/examples/primer3/primer_syntax_input
+%%PORTDOCS%%share/examples/primer3/primer_syntax_output
+%%PORTDOCS%%share/examples/primer3/primer_task_formated_output
+%%PORTDOCS%%share/examples/primer3/primer_task_input
+%%PORTDOCS%%share/examples/primer3/primer_task_output
+%%PORTDOCS%%share/examples/primer3/primer_test.pl
+%%PORTDOCS%%share/examples/primer3/repeat_lib1
+%%PORTDOCS%%share/examples/primer3/repeat_lib2
+%%PORTDOCS%%share/examples/primer3/repeat_lib3
+%%PORTDOCS%%share/examples/primer3/repeat_lib4
+%%PORTDOCS%%share/examples/primer3/repeat_lib5
+%%PORTDOCS%%share/examples/primer3/repeat_lib6
+bin/primer3
+share/primer3/Copyright
+share/primer3/primer3_www.cgi
+share/primer3/primer3_www_help.html
+share/primer3/primer3_www_results.cgi
+share/primer3/primer3_www_results_help.html
+@dirrm share/primer3
+%%PORTDOCS%%@dirrm share/doc/primer3/
+%%PORTDOCS%%@dirrm share/examples/primer3/primer1_list_last
+%%PORTDOCS%%@dirrm share/examples/primer3/primer1_list_tmp
+%%PORTDOCS%%@dirrm share/examples/primer3/primer_global_err
+%%PORTDOCS%%@dirrm share/examples/primer3/primer_list_last
+%%PORTDOCS%%@dirrm share/examples/primer3/primer_list_tmp
+%%PORTDOCS%%@dirrm share/examples/primer3/