diff options
author | Wen Heping <wen@FreeBSD.org> | 2010-11-10 08:52:26 +0000 |
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committer | Wen Heping <wen@FreeBSD.org> | 2010-11-10 08:52:26 +0000 |
commit | dbe1b3c46bdc69c89310f41c1f69e6906447340e (patch) | |
tree | a27be9ddd3d6dc80a9d2d3170a82e2d95eae1a38 /biology/pycogent | |
parent | 55d546ae7275c14c956cdc95a33ffad4963a431f (diff) | |
download | ports-dbe1b3c46bdc69c89310f41c1f69e6906447340e.tar.gz ports-dbe1b3c46bdc69c89310f41c1f69e6906447340e.zip |
Notes
Diffstat (limited to 'biology/pycogent')
-rw-r--r-- | biology/pycogent/Makefile | 3 | ||||
-rw-r--r-- | biology/pycogent/distinfo | 5 | ||||
-rw-r--r-- | biology/pycogent/pkg-plist | 37 |
3 files changed, 41 insertions, 4 deletions
diff --git a/biology/pycogent/Makefile b/biology/pycogent/Makefile index 12c45ec638fc..286e9d129b90 100644 --- a/biology/pycogent/Makefile +++ b/biology/pycogent/Makefile @@ -6,7 +6,7 @@ # PORTNAME= pycogent -PORTVERSION= 1.4.1 +PORTVERSION= 1.5 CATEGORIES= biology python MASTER_SITES= SF/${PORTNAME}/PyCogent/${PORTVERSION} DISTNAME= PyCogent-${PORTVERSION} @@ -24,5 +24,6 @@ RUN_DEPENDS= ${BUILD_DEPENDS} USE_PYTHON= yes USE_PYDISTUTILS= yes PYDISTUTILS_PKGNAME= cogent +PYDISTUTILS_PKGVERSION= 1.5.0 .include <bsd.port.mk> diff --git a/biology/pycogent/distinfo b/biology/pycogent/distinfo index b2b07ecb99f3..755af4b8330e 100644 --- a/biology/pycogent/distinfo +++ b/biology/pycogent/distinfo @@ -1,3 +1,2 @@ -MD5 (PyCogent-1.4.1.tgz) = c5f50b108d87001d0840a7f721f78977 -SHA256 (PyCogent-1.4.1.tgz) = 4f0275c7b97e22b8a8286e8c5831599871f66bcf6bbb8f2dd70d3e300df3a217 -SIZE (PyCogent-1.4.1.tgz) = 2596901 +SHA256 (PyCogent-1.5.tgz) = b20276c6607ca2c53f26df8837e5d43c7e7af45bf0aa5592da4c73060891ab8d +SIZE (PyCogent-1.5.tgz) = 2992994 diff --git a/biology/pycogent/pkg-plist b/biology/pycogent/pkg-plist index d29214841cae..81d4bebc9bdc 100644 --- a/biology/pycogent/pkg-plist +++ b/biology/pycogent/pkg-plist @@ -187,6 +187,9 @@ %%PYTHON_SITELIBDIR%%/cogent/cluster/__init__.py %%PYTHON_SITELIBDIR%%/cogent/cluster/__init__.pyc %%PYTHON_SITELIBDIR%%/cogent/cluster/__init__.pyo +%%PYTHON_SITELIBDIR%%/cogent/cluster/approximate_mds.py +%%PYTHON_SITELIBDIR%%/cogent/cluster/approximate_mds.pyc +%%PYTHON_SITELIBDIR%%/cogent/cluster/approximate_mds.pyo %%PYTHON_SITELIBDIR%%/cogent/cluster/goodness_of_fit.py %%PYTHON_SITELIBDIR%%/cogent/cluster/goodness_of_fit.pyc %%PYTHON_SITELIBDIR%%/cogent/cluster/goodness_of_fit.pyo @@ -477,6 +480,10 @@ %%PYTHON_SITELIBDIR%%/cogent/maths/optimisers.py %%PYTHON_SITELIBDIR%%/cogent/maths/optimisers.pyc %%PYTHON_SITELIBDIR%%/cogent/maths/optimisers.pyo +%%PYTHON_SITELIBDIR%%/cogent/maths/_period.so +%%PYTHON_SITELIBDIR%%/cogent/maths/period.py +%%PYTHON_SITELIBDIR%%/cogent/maths/period.pyc +%%PYTHON_SITELIBDIR%%/cogent/maths/period.pyo %%PYTHON_SITELIBDIR%%/cogent/maths/scipy_optimisers.py %%PYTHON_SITELIBDIR%%/cogent/maths/scipy_optimisers.pyc %%PYTHON_SITELIBDIR%%/cogent/maths/scipy_optimisers.pyo @@ -517,12 +524,18 @@ %%PYTHON_SITELIBDIR%%/cogent/maths/stats/histogram.py %%PYTHON_SITELIBDIR%%/cogent/maths/stats/histogram.pyc %%PYTHON_SITELIBDIR%%/cogent/maths/stats/histogram.pyo +%%PYTHON_SITELIBDIR%%/cogent/maths/stats/information_criteria.py +%%PYTHON_SITELIBDIR%%/cogent/maths/stats/information_criteria.pyc +%%PYTHON_SITELIBDIR%%/cogent/maths/stats/information_criteria.pyo %%PYTHON_SITELIBDIR%%/cogent/maths/stats/kendall.py %%PYTHON_SITELIBDIR%%/cogent/maths/stats/kendall.pyc %%PYTHON_SITELIBDIR%%/cogent/maths/stats/kendall.pyo %%PYTHON_SITELIBDIR%%/cogent/maths/stats/ks.py %%PYTHON_SITELIBDIR%%/cogent/maths/stats/ks.pyc %%PYTHON_SITELIBDIR%%/cogent/maths/stats/ks.pyo +%%PYTHON_SITELIBDIR%%/cogent/maths/stats/period.py +%%PYTHON_SITELIBDIR%%/cogent/maths/stats/period.pyc +%%PYTHON_SITELIBDIR%%/cogent/maths/stats/period.pyo %%PYTHON_SITELIBDIR%%/cogent/maths/stats/special.py %%PYTHON_SITELIBDIR%%/cogent/maths/stats/special.pyc %%PYTHON_SITELIBDIR%%/cogent/maths/stats/special.pyo @@ -565,6 +578,9 @@ %%PYTHON_SITELIBDIR%%/cogent/parse/agilent_microarray.py %%PYTHON_SITELIBDIR%%/cogent/parse/agilent_microarray.pyc %%PYTHON_SITELIBDIR%%/cogent/parse/agilent_microarray.pyo +%%PYTHON_SITELIBDIR%%/cogent/parse/binary_sff.py +%%PYTHON_SITELIBDIR%%/cogent/parse/binary_sff.pyc +%%PYTHON_SITELIBDIR%%/cogent/parse/binary_sff.pyo %%PYTHON_SITELIBDIR%%/cogent/parse/blast.py %%PYTHON_SITELIBDIR%%/cogent/parse/blast.pyc %%PYTHON_SITELIBDIR%%/cogent/parse/blast.pyo @@ -625,6 +641,9 @@ %%PYTHON_SITELIBDIR%%/cogent/parse/fasta.py %%PYTHON_SITELIBDIR%%/cogent/parse/fasta.pyc %%PYTHON_SITELIBDIR%%/cogent/parse/fasta.pyo +%%PYTHON_SITELIBDIR%%/cogent/parse/fastq.py +%%PYTHON_SITELIBDIR%%/cogent/parse/fastq.pyc +%%PYTHON_SITELIBDIR%%/cogent/parse/fastq.pyo %%PYTHON_SITELIBDIR%%/cogent/parse/foldalign.py %%PYTHON_SITELIBDIR%%/cogent/parse/foldalign.pyc %%PYTHON_SITELIBDIR%%/cogent/parse/foldalign.pyo @@ -652,12 +671,24 @@ %%PYTHON_SITELIBDIR%%/cogent/parse/flowgram_parser.py %%PYTHON_SITELIBDIR%%/cogent/parse/flowgram_parser.pyc %%PYTHON_SITELIBDIR%%/cogent/parse/flowgram_parser.pyo +%%PYTHON_SITELIBDIR%%/cogent/parse/illumina_sequence.py +%%PYTHON_SITELIBDIR%%/cogent/parse/illumina_sequence.pyc +%%PYTHON_SITELIBDIR%%/cogent/parse/illumina_sequence.pyo %%PYTHON_SITELIBDIR%%/cogent/parse/ilm.py %%PYTHON_SITELIBDIR%%/cogent/parse/ilm.pyc %%PYTHON_SITELIBDIR%%/cogent/parse/ilm.pyo %%PYTHON_SITELIBDIR%%/cogent/parse/infernal.py %%PYTHON_SITELIBDIR%%/cogent/parse/infernal.pyc %%PYTHON_SITELIBDIR%%/cogent/parse/infernal.pyo +%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_ko.py +%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_ko.pyc +%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_ko.pyo +%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_pos.py +%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_pos.pyc +%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_pos.pyo +%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_taxonomy.py +%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_taxonomy.pyc +%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_taxonomy.pyo %%PYTHON_SITELIBDIR%%/cogent/parse/knetfold.py %%PYTHON_SITELIBDIR%%/cogent/parse/knetfold.pyc %%PYTHON_SITELIBDIR%%/cogent/parse/knetfold.pyo @@ -915,12 +946,18 @@ %%PYTHON_SITELIBDIR%%/cogent/util/parallel.py %%PYTHON_SITELIBDIR%%/cogent/util/parallel.pyc %%PYTHON_SITELIBDIR%%/cogent/util/parallel.pyo +%%PYTHON_SITELIBDIR%%/cogent/util/progress_display.py +%%PYTHON_SITELIBDIR%%/cogent/util/progress_display.pyc +%%PYTHON_SITELIBDIR%%/cogent/util/progress_display.pyo %%PYTHON_SITELIBDIR%%/cogent/util/recode_alignment.py %%PYTHON_SITELIBDIR%%/cogent/util/recode_alignment.pyc %%PYTHON_SITELIBDIR%%/cogent/util/recode_alignment.pyo %%PYTHON_SITELIBDIR%%/cogent/util/table.py %%PYTHON_SITELIBDIR%%/cogent/util/table.pyc %%PYTHON_SITELIBDIR%%/cogent/util/table.pyo +%%PYTHON_SITELIBDIR%%/cogent/util/terminal.py +%%PYTHON_SITELIBDIR%%/cogent/util/terminal.pyc +%%PYTHON_SITELIBDIR%%/cogent/util/terminal.pyo %%PYTHON_SITELIBDIR%%/cogent/util/transform.py %%PYTHON_SITELIBDIR%%/cogent/util/transform.pyc %%PYTHON_SITELIBDIR%%/cogent/util/transform.pyo |