5 files changed, 203 insertions, 39 deletions

diff --git a/biology/pymol/Makefile b/biology/pymol/Makefile
index 9cf17a38e4b1..42520bbe5f12 100644
--- a/biology/pymol/Makefile
+++ b/biology/pymol/Makefile
@@ -5,8 +5,7 @@
 # $FreeBSD$
 
 PORTNAME=	pymol
-PORTVERSION=	0.98
-PORTREVISION=	1
+PORTVERSION=	0.99rc1
 CATEGORIES=	biology python
 MASTER_SITES=	${MASTER_SITE_SOURCEFORGE}
 MASTER_SITE_SUBDIR=	pymol
@@ -22,7 +21,7 @@ RUN_DEPENDS=	${PYNUMERIC} \
 LIB_DEPENDS=	glut.4:${PORTSDIR}/graphics/libglut \
 		png.5:${PORTSDIR}/graphics/png
 
-WRKSRC=		${WRKDIR}/pymol-${PORTVERSION}
+WRKSRC=		${WRKDIR}/pymol-0.99
 USE_GMAKE=	yes
 USE_PYTHON=	yes
 
@@ -35,18 +34,11 @@ PICFLAG?=	-fpic
 .endif
 
 pre-patch:
-	@${INSTALL_DATA} ${WRKSRC}/setup/Rules.linux ${WRKSRC}/Rules.make
-.if ${PYTHON_REL} >= 230
-	@${REINPLACE_CMD} -e 's,@DEFS@,,g' ${WRKSRC}/contrib/modules/Makefile.pre.in.src
-.endif
+	@${CP} ${WRKSRC}/setup/Rules.linux ${WRKSRC}/Rules.make
 
 post-patch:
-	@${INSTALL_DATA} ${WRKSRC}/setup/pymol.com.linux-rh7x ${WRKSRC}/setup/pymol.com
-	@${REINPLACE_CMD} -e 's,@PREFIX@,${PREFIX},g' -e 's,@LOCALBASE@,${LOCALBASE},g' ${WRKSRC}/setup/pymol.com
-	@${REINPLACE_CMD} -e 's,@PREFIX@,${PREFIX},g' \
-		-e 's,examples\(/devel/cgo03.py\),${EXAMPLESDIR}\1,' \
-		${WRKSRC}/modules/pmg_tk/Demo.py
-	@${RM} -f ${WRKSRC}/modules/pmg_tk/Demo.py.*
+	@${CP} ${WRKSRC}/setup/pymol.com.linux-rh7x ${WRKSRC}/pymol
+	@${REINPLACE_CMD} -e 's,@PREFIX@,${PREFIX},g' -e 's,@LOCALBASE@,${LOCALBASE},g' ${WRKSRC}/pymol
 	${REINPLACE_CMD} -e 's,@PYTHON_VERSION@,${PYTHON_VERSION},g' \
 		-e 's,@LOCALBASE@,${LOCALBASE},g' \
 		-e 's,@X11BASE@,${X11BASE},g' \
@@ -55,9 +47,9 @@ post-patch:
 		-e 's,@PICFLAG@,${PICFLAG},g' ${WRKSRC}/Rules.make
 
 do-install:
-	@${INSTALL_SCRIPT} ${WRKSRC}/setup/pymol.com ${PREFIX}/bin/pymol
+	@${INSTALL_SCRIPT} ${WRKSRC}/pymol ${PREFIX}/bin/pymol
 	@${MKDIR} ${PREFIX}/share/pymol
-	@${TAR} -C ${WRKSRC} -chf - modules test | \
+	@${TAR} -C ${WRKSRC} -chf - data modules test | \
 		${TAR} -xf - -C ${PREFIX}/share/pymol
 .if !defined(NOPORTDOCS)
 	@${MKDIR} ${EXAMPLESDIR}
diff --git a/biology/pymol/distinfo b/biology/pymol/distinfo
index f369d600e3fd..adf91f915ecf 100644
--- a/biology/pymol/distinfo
+++ b/biology/pymol/distinfo
@@ -1,3 +1,3 @@
-MD5 (pymol-0_98-src.tgz) = 096cc1d06fa36eb1c8ad30560d06b81e
-SHA256 (pymol-0_98-src.tgz) = 20e060d6152f111d8992af2bf5bc07ea3b6ba664019b2dc12e24ee4cba7e6960
-SIZE (pymol-0_98-src.tgz) = 3033733
+MD5 (pymol-0_99rc1-src.tgz) = 1dfb4b943e6a8dba06f4446b8a185bae
+SHA256 (pymol-0_99rc1-src.tgz) = 1121d80d7268583db78f7f75e91669401239ab44e9319abdd970de1f81e12aab
+SIZE (pymol-0_99rc1-src.tgz) = 4178605
diff --git a/biology/pymol/files/patch-Rules.make b/biology/pymol/files/patch-Rules.make
index 1191992b0568..dd4425e2be00 100644
--- a/biology/pymol/files/patch-Rules.make
+++ b/biology/pymol/files/patch-Rules.make
@@ -1,5 +1,5 @@
---- Rules.make.orig	Wed Mar 23 10:53:37 2005
-+++ Rules.make	Wed Mar 23 10:54:06 2005
+--- Rules.make.org	Sat Jul  1 12:28:37 2006
++++ Rules.make	Sat Jul  1 12:30:55 2006
 @@ -4,27 +4,27 @@
  #
  #- Building ----------------------------------------------------------
@@ -69,12 +69,3 @@
  
  LIB_DIRS = $(EXT_LIB_DIR) $(PYTHON_LIB_DIR) $(XLIB_DIR)
  
-@@ -79,7 +79,7 @@
-    -I../layer3 -I../layer4 -I../layer5 
- 
- C_FLAGS = $(CCOPT1) $(CCOPT2) $(EXT_INC_DIR) $(PYTHON_INC_DIR) \
--   $(XINC_DIR) $(PNG) $(DEFS) $(BUGS)
-+   $(XINC_DIR) $(PNG) $(DEFS) $(BUGS) @PICFLAG@
- 
- CFLAGS = $(C_FLAGS)
- 
diff --git a/biology/pymol/files/patch-setup+pymol+com+linux-rh7x b/biology/pymol/files/patch-setup+pymol+com+linux-rh7x
index 3d785f32abc9..c1273c309745 100644
--- a/biology/pymol/files/patch-setup+pymol+com+linux-rh7x
+++ b/biology/pymol/files/patch-setup+pymol+com+linux-rh7x
@@ -1,18 +1,27 @@
---- setup/pymol.com.linux-rh7x.orig	Thu Jul 11 08:33:42 2002
-+++ setup/pymol.com.linux-rh7x	Thu Jul 11 08:34:37 2002
+--- setup/pymol.com.linux-rh7x	Sun Nov 20 02:46:39 2005
++++ setup/pymol.com.linux-rh7x	Sat Jul  1 13:28:49 2006
 @@ -5,7 +5,7 @@
  # ==============================================================
  # Set PYMOL_PATH to point at the correct location on your system
  #
--setenv PYMOL_PATH /usr/local/pymol
-+setenv PYMOL_PATH @PREFIX@/share/pymol
+-PYMOL_PATH=/usr/local/pymol
++PYMOL_PATH=@LOCALBASE@/share/pymol
+ export PYMOL_PATH
  #
  # ==============================================================
- # (no changes usually required below here)
-@@ -21,5 +21,5 @@
+@@ -13,13 +13,13 @@
  #
- #dbx /usr/bin/python 
- #gdb /usr/bin/python 
--/usr/bin/python $PYMOL_PATH/modules/launch_pymol.py $*
-+@LOCALBASE@/bin/python $PYMOL_PATH/modules/launch_pymol.py $*
+ # python modules
+ #
+-if [ "$PYTHONPATH" == "" ]; then
++if [ "$PYTHONPATH" = "" ]; then
+ PYTHONPATH=${PYMOL_PATH}/modules
+ else
+ PYTHONPATH=${PYMOL_PATH}/modules:${PYTHONPATH}
+ fi
+ export PYTHONPATH
+ #
+-/usr/bin/python $PYMOL_PATH/modules/pymol/__init__.py "$@"
++@LOCALBASE@/bin/python $PYMOL_PATH/modules/pymol/__init__.py "$@"
+ 
  
diff --git a/biology/pymol/pkg-plist b/biology/pymol/pkg-plist
index 9ed068d748bb..269b5262b20a 100644
--- a/biology/pymol/pkg-plist
+++ b/biology/pymol/pkg-plist
@@ -1,4 +1,133 @@
 bin/pymol
+share/pymol/data/chempy/fragments/ace.pkl
+share/pymol/data/chempy/fragments/acetylene.pkl
+share/pymol/data/chempy/fragments/ala.pkl
+share/pymol/data/chempy/fragments/arg.pkl
+share/pymol/data/chempy/fragments/asn.pkl
+share/pymol/data/chempy/fragments/asp.pkl
+share/pymol/data/chempy/fragments/benzene.pkl
+share/pymol/data/chempy/fragments/butane.pkl
+share/pymol/data/chempy/fragments/ct_ala.pkl
+share/pymol/data/chempy/fragments/ct_arg.pkl
+share/pymol/data/chempy/fragments/ct_asn.pkl
+share/pymol/data/chempy/fragments/ct_asp.pkl
+share/pymol/data/chempy/fragments/ct_cys.pkl
+share/pymol/data/chempy/fragments/ct_gln.pkl
+share/pymol/data/chempy/fragments/ct_glu.pkl
+share/pymol/data/chempy/fragments/ct_gly.pkl
+share/pymol/data/chempy/fragments/ct_hid.pkl
+share/pymol/data/chempy/fragments/ct_hie.pkl
+share/pymol/data/chempy/fragments/ct_hip.pkl
+share/pymol/data/chempy/fragments/ct_his.pkl
+share/pymol/data/chempy/fragments/ct_ile.pkl
+share/pymol/data/chempy/fragments/ct_leu.pkl
+share/pymol/data/chempy/fragments/ct_lys.pkl
+share/pymol/data/chempy/fragments/ct_met.pkl
+share/pymol/data/chempy/fragments/ct_phe.pkl
+share/pymol/data/chempy/fragments/ct_pro.pkl
+share/pymol/data/chempy/fragments/ct_ser.pkl
+share/pymol/data/chempy/fragments/ct_thr.pkl
+share/pymol/data/chempy/fragments/ct_trp.pkl
+share/pymol/data/chempy/fragments/ct_tyr.pkl
+share/pymol/data/chempy/fragments/ct_val.pkl
+share/pymol/data/chempy/fragments/cyclobutane.pkl
+share/pymol/data/chempy/fragments/cycloheptane.pkl
+share/pymol/data/chempy/fragments/cyclohexane.pkl
+share/pymol/data/chempy/fragments/cyclopentadiene.pkl
+share/pymol/data/chempy/fragments/cyclopentane.pkl
+share/pymol/data/chempy/fragments/cys.pkl
+share/pymol/data/chempy/fragments/ethylene.pkl
+share/pymol/data/chempy/fragments/formaldehyde.pkl
+share/pymol/data/chempy/fragments/formamide.pkl
+share/pymol/data/chempy/fragments/gln.pkl
+share/pymol/data/chempy/fragments/glu.pkl
+share/pymol/data/chempy/fragments/gly.pkl
+share/pymol/data/chempy/fragments/hid.pkl
+share/pymol/data/chempy/fragments/hie.pkl
+share/pymol/data/chempy/fragments/hip.pkl
+share/pymol/data/chempy/fragments/his.pkl
+share/pymol/data/chempy/fragments/ile.pkl
+share/pymol/data/chempy/fragments/leu.pkl
+share/pymol/data/chempy/fragments/lys.pkl
+share/pymol/data/chempy/fragments/met.pkl
+share/pymol/data/chempy/fragments/methane.pkl
+share/pymol/data/chempy/fragments/nme.pkl
+share/pymol/data/chempy/fragments/nt_ala.pkl
+share/pymol/data/chempy/fragments/nt_arg.pkl
+share/pymol/data/chempy/fragments/nt_asn.pkl
+share/pymol/data/chempy/fragments/nt_asp.pkl
+share/pymol/data/chempy/fragments/nt_cys.pkl
+share/pymol/data/chempy/fragments/nt_gln.pkl
+share/pymol/data/chempy/fragments/nt_glu.pkl
+share/pymol/data/chempy/fragments/nt_gly.pkl
+share/pymol/data/chempy/fragments/nt_hid.pkl
+share/pymol/data/chempy/fragments/nt_hie.pkl
+share/pymol/data/chempy/fragments/nt_hip.pkl
+share/pymol/data/chempy/fragments/nt_his.pkl
+share/pymol/data/chempy/fragments/nt_ile.pkl
+share/pymol/data/chempy/fragments/nt_leu.pkl
+share/pymol/data/chempy/fragments/nt_lys.pkl
+share/pymol/data/chempy/fragments/nt_met.pkl
+share/pymol/data/chempy/fragments/nt_phe.pkl
+share/pymol/data/chempy/fragments/nt_pro.pkl
+share/pymol/data/chempy/fragments/nt_ser.pkl
+share/pymol/data/chempy/fragments/nt_thr.pkl
+share/pymol/data/chempy/fragments/nt_trp.pkl
+share/pymol/data/chempy/fragments/nt_tyr.pkl
+share/pymol/data/chempy/fragments/nt_val.pkl
+share/pymol/data/chempy/fragments/peptide.pkl
+share/pymol/data/chempy/fragments/phe.pkl
+share/pymol/data/chempy/fragments/pro.pkl
+share/pymol/data/chempy/fragments/realtime.pkl
+share/pymol/data/chempy/fragments/ser.pkl
+share/pymol/data/chempy/fragments/sulfone.pkl
+share/pymol/data/chempy/fragments/thr.pkl
+share/pymol/data/chempy/fragments/trp.pkl
+share/pymol/data/chempy/fragments/tyr.pkl
+share/pymol/data/chempy/fragments/val.pkl
+share/pymol/data/chempy/sidechains/generate1.py
+share/pymol/data/chempy/sidechains/generate2.py
+share/pymol/data/chempy/sidechains/sc_bb_dep.pkl
+share/pymol/data/chempy/sidechains/sc_bb_dep.py
+share/pymol/data/chempy/sidechains/sc_bb_ind.pkl
+share/pymol/data/chempy/sidechains/sc_bb_ind.py
+share/pymol/data/chempy/sidechains/sc_library.pkl
+share/pymol/data/chempy/tinker/Makefile
+share/pymol/data/chempy/tinker/chempy.prm
+share/pymol/data/chempy/tinker/make99_simple.py
+share/pymol/data/chempy/tinker/make_simple.py
+share/pymol/data/chempy/tinker/parm94.dat
+share/pymol/data/chempy/tinker/parm94_rsm.dat
+share/pymol/data/chempy/tinker/parm96.dat
+share/pymol/data/chempy/tinker/parm96_rsm.dat
+share/pymol/data/chempy/tinker/parm99.dat
+share/pymol/data/chempy/tinker/parm99_simple.dat
+share/pymol/data/chempy/tinker/parm99_wld.dat
+share/pymol/data/chempy/tinker/parm_simple.dat
+share/pymol/data/chempy/tinker/parm_simple.inp
+share/pymol/data/chempy/water.pdb
+share/pymol/data/demo/1hpv.r3d
+share/pymol/data/demo/1tii.pdb
+share/pymol/data/demo/cgo03.py
+share/pymol/data/demo/il2.pdb
+share/pymol/data/demo/pept.pdb
+share/pymol/data/demo/pept.pkl
+share/pymol/data/pmg_tk/bitmaps/builder/aro5.gif
+share/pymol/data/pmg_tk/bitmaps/builder/aro5.xbm
+share/pymol/data/pmg_tk/bitmaps/builder/aro6.gif
+share/pymol/data/pmg_tk/bitmaps/builder/aro6.xbm
+share/pymol/data/pmg_tk/bitmaps/builder/cyc4.gif
+share/pymol/data/pmg_tk/bitmaps/builder/cyc4.xbm
+share/pymol/data/pmg_tk/bitmaps/builder/cyc5.gif
+share/pymol/data/pmg_tk/bitmaps/builder/cyc5.xbm
+share/pymol/data/pmg_tk/bitmaps/builder/cyc6.gif
+share/pymol/data/pmg_tk/bitmaps/builder/cyc6.xbm
+share/pymol/data/pmg_tk/bitmaps/builder/cyc7.gif
+share/pymol/data/pmg_tk/bitmaps/builder/cyc7.xbm
+share/pymol/data/pymol/cmyk.png
+share/pymol/data/pymol/matrices/BLOSUM62
+share/pymol/data/pymol/splash.png
+share/pymol/data/tut/1hpv.pdb
 share/pymol/modules/chempy/__init__.py
 share/pymol/modules/chempy/__init__.pyc
 share/pymol/modules/chempy/__init__.pyo
@@ -356,6 +485,9 @@ share/pymol/modules/pymol/wizard/appearance.pyo
 share/pymol/modules/pymol/wizard/benchmark.py
 share/pymol/modules/pymol/wizard/benchmark.pyc
 share/pymol/modules/pymol/wizard/benchmark.pyo
+share/pymol/modules/pymol/wizard/box.py
+share/pymol/modules/pymol/wizard/box.pyc
+share/pymol/modules/pymol/wizard/box.pyo
 share/pymol/modules/pymol/wizard/charge.py
 share/pymol/modules/pymol/wizard/charge.pyc
 share/pymol/modules/pymol/wizard/charge.pyo
@@ -371,6 +503,9 @@ share/pymol/modules/pymol/wizard/density.pyo
 share/pymol/modules/pymol/wizard/distance.py
 share/pymol/modules/pymol/wizard/distance.pyc
 share/pymol/modules/pymol/wizard/distance.pyo
+share/pymol/modules/pymol/wizard/dragging.py
+share/pymol/modules/pymol/wizard/dragging.pyc
+share/pymol/modules/pymol/wizard/dragging.pyo
 share/pymol/modules/pymol/wizard/fedora.py
 share/pymol/modules/pymol/wizard/fedora.pyc
 share/pymol/modules/pymol/wizard/fedora.pyo
@@ -401,6 +536,12 @@ share/pymol/modules/pymol/wizard/sculpting.pyo
 share/pymol/modules/pymol/wizard/security.py
 share/pymol/modules/pymol/wizard/security.pyc
 share/pymol/modules/pymol/wizard/security.pyo
+share/pymol/modules/pymol/wizard/stereodemo.py
+share/pymol/modules/pymol/wizard/stereodemo.pyc
+share/pymol/modules/pymol/wizard/stereodemo.pyo
+share/pymol/modules/pymol/wizard/toggle.py
+share/pymol/modules/pymol/wizard/toggle.pyc
+share/pymol/modules/pymol/wizard/toggle.pyo
 share/pymol/modules/pymol/wizarding.py
 share/pymol/modules/pymol/wizarding.pyc
 share/pymol/modules/pymol/wizarding.pyo
@@ -429,6 +570,7 @@ share/pymol/test/dat/il2.pdb
 share/pymol/test/dat/ligs3d.sdf
 share/pymol/test/dat/names.pdb
 share/pymol/test/dat/odd01.pdb
+share/pymol/test/dat/odd02.pdb
 share/pymol/test/dat/pept.pdb
 share/pymol/test/dat/pept.pkl
 share/pymol/test/dat/pept.r3d
@@ -444,6 +586,10 @@ share/pymol/test/inp/B04.py
 share/pymol/test/inp/B05.py
 share/pymol/test/inp/B06.py
 share/pymol/test/inp/B07.py
+share/pymol/test/inp/B08.py
+share/pymol/test/inp/B09.py
+share/pymol/test/inp/B10.py
+share/pymol/test/inp/B11.py
 share/pymol/test/inp/C0001quit.pml
 share/pymol/test/inp/C0010hello.pml
 share/pymol/test/inp/C0020pdb.pml
@@ -472,6 +618,7 @@ share/pymol/test/inp/C0300session.pml
 share/pymol/test/inp/C0500misc.pml
 share/pymol/test/inp/C0600util.pml
 share/pymol/test/inp/C0700odd.pml
+share/pymol/test/inp/C0740multipdb.pml
 share/pymol/test/inp/C0800matrices.pml
 share/pymol/test/inp/C1000viewing.pml
 share/pymol/test/inp/C1010helping.pml
@@ -486,6 +633,8 @@ share/pymol/test/inp/C1080isomore.pml
 share/pymol/test/inp/C1090coulomb.pml
 share/pymol/test/inp/C1095slice.pml
 share/pymol/test/inp/C1100do.py
+share/pymol/test/inp/C1200matrix_maps.pml
+share/pymol/test/inp/C2000returns.py
 share/pymol/test/inp/L0010ccp4read.pml
 share/pymol/test/inp/L0020xplorread.pml
 share/pymol/test/inp/L0030isomesh.pml
@@ -529,6 +678,8 @@ share/pymol/test/ref/C0202help_python.log
 share/pymol/test/ref/C0300session.log
 share/pymol/test/ref/C0500misc.log
 share/pymol/test/ref/C0600util.log
+share/pymol/test/ref/C0700.odd.G.pdb
+share/pymol/test/ref/C0700.odd.H.pdb
 share/pymol/test/ref/C0700odd.1.pdb
 share/pymol/test/ref/C0700odd.2.pdb
 share/pymol/test/ref/C0700odd.3.pdb
@@ -543,7 +694,9 @@ share/pymol/test/ref/C0700odd.B.pdb
 share/pymol/test/ref/C0700odd.C.pdb
 share/pymol/test/ref/C0700odd.D.pdb
 share/pymol/test/ref/C0700odd.E.pdb
+share/pymol/test/ref/C0700odd.F.pdb
 share/pymol/test/ref/C0700odd.log
+share/pymol/test/ref/C0740multipdb.log
 share/pymol/test/ref/C0800matrices.log
 share/pymol/test/ref/C1000viewing.log
 share/pymol/test/ref/C1010helping.log
@@ -558,6 +711,8 @@ share/pymol/test/ref/C1080isomore.log
 share/pymol/test/ref/C1090coulomb.log
 share/pymol/test/ref/C1095slice.log
 share/pymol/test/ref/C1100do.log
+share/pymol/test/ref/C1200matrix_maps.log
+share/pymol/test/ref/C2000returns.log
 share/pymol/test/ref/L0010ccp4read.log
 share/pymol/test/ref/L0020xplorread.log
 share/pymol/test/ref/L0030isomesh.log
@@ -596,17 +751,31 @@ share/pymol/test/win.py
 @dirrm share/pymol/modules/chempy/bmin
 @dirrm share/pymol/modules/chempy
 @dirrm share/pymol/modules
+@dirrm share/pymol/data/tut
+@dirrm share/pymol/data/pymol/matrices
+@dirrm share/pymol/data/pymol
+@dirrm share/pymol/data/pmg_tk/bitmaps/builder
+@dirrm share/pymol/data/pmg_tk/bitmaps
+@dirrm share/pymol/data/pmg_tk
+@dirrm share/pymol/data/demo
+@dirrm share/pymol/data/chempy/tinker
+@dirrm share/pymol/data/chempy/sidechains
+@dirrm share/pymol/data/chempy/fragments
+@dirrm share/pymol/data/chempy
+@dirrm share/pymol/data
 @dirrm share/pymol
 %%PORTDOCS%%%%EXAMPLESDIR%%/chempy/generate_amber.py
 %%PORTDOCS%%%%EXAMPLESDIR%%/chempy/generate_mmff.py
 %%PORTDOCS%%%%EXAMPLESDIR%%/cookbook/README
 %%PORTDOCS%%%%EXAMPLESDIR%%/cookbook/build_peptide.py
 %%PORTDOCS%%%%EXAMPLESDIR%%/cookbook/contact.pml
+%%PORTDOCS%%%%EXAMPLESDIR%%/cookbook/dali.py
 %%PORTDOCS%%%%EXAMPLESDIR%%/cookbook/density.pml
 %%PORTDOCS%%%%EXAMPLESDIR%%/cookbook/groel_es.pml
 %%PORTDOCS%%%%EXAMPLESDIR%%/cookbook/packing.pml
 %%PORTDOCS%%%%EXAMPLESDIR%%/cookbook/packsurf.pml
 %%PORTDOCS%%%%EXAMPLESDIR%%/cookbook/ribosome.pml
+%%PORTDOCS%%%%EXAMPLESDIR%%/cookbook/scenes2movie.pml
 %%PORTDOCS%%%%EXAMPLESDIR%%/devel/brick01.py
 %%PORTDOCS%%%%EXAMPLESDIR%%/devel/cgo01.py
 %%PORTDOCS%%%%EXAMPLESDIR%%/devel/cgo02.py
@@ -621,8 +790,11 @@ share/pymol/test/win.py
 %%PORTDOCS%%%%EXAMPLESDIR%%/devel/gl01.py
 %%PORTDOCS%%%%EXAMPLESDIR%%/devel/gl02.py
 %%PORTDOCS%%%%EXAMPLESDIR%%/devel/gl03.py
+%%PORTDOCS%%%%EXAMPLESDIR%%/devel/importing.py
+%%PORTDOCS%%%%EXAMPLESDIR%%/devel/membrane.py
 %%PORTDOCS%%%%EXAMPLESDIR%%/devel/mutate01.pml
 %%PORTDOCS%%%%EXAMPLESDIR%%/devel/mutate02.py
+%%PORTDOCS%%%%EXAMPLESDIR%%/devel/my_ext_gui.py
 %%PORTDOCS%%%%EXAMPLESDIR%%/devel/pick_wiz.py
 %%PORTDOCS%%%%EXAMPLESDIR%%/devel/povray01.py
 %%PORTDOCS%%%%EXAMPLESDIR%%/devel/sd_annotate.pml