diff options
| author | Johann Visagie <wjv@FreeBSD.org> | 2002-03-27 14:18:49 +0000 |
|---|---|---|
| committer | Johann Visagie <wjv@FreeBSD.org> | 2002-03-27 14:18:49 +0000 |
| commit | 9e8dd630bc3d030e949d4338201a3a53c3a11b9f (patch) | |
| tree | 8695db13344bb9a7717da4ec017a88b8d076b722 /biology/tRNAscan-SE/files | |
| parent | 5098d66096e9e12c2ce3f6bfc563bcd147b92aef (diff) | |
Notes
Diffstat (limited to 'biology/tRNAscan-SE/files')
| -rw-r--r-- | biology/tRNAscan-SE/files/patch-aa | 35 |
1 files changed, 35 insertions, 0 deletions
diff --git a/biology/tRNAscan-SE/files/patch-aa b/biology/tRNAscan-SE/files/patch-aa new file mode 100644 index 000000000000..82f9a3b420a0 --- /dev/null +++ b/biology/tRNAscan-SE/files/patch-aa @@ -0,0 +1,35 @@ +--- Makefile.orig Sat Oct 7 00:16:41 2000 ++++ Makefile Thu Dec 20 17:26:37 2001 +@@ -19,10 +19,11 @@ + ## (this could be 'perl5' or otherwise on some systems) + PERLBIN = perl + ++prefix = ${PREFIX} + ## where you want things installed +-BINDIR = $(HOME)/bin +-LIBDIR = $(HOME)/lib/tRNAscan-SE +-MANDIR = $(HOME)/man ++BINDIR = $(prefix)/bin ++LIBDIR = $(prefix)/share/tRNAscan-SE ++MANDIR = $(prefix)/man + + ## NOTE !! If you later manually move the location of + ## binaries or data files in the BINDIR or LIBDIR directories, +@@ -106,7 +107,7 @@ + + MPOBJ = mpviterbi.o mp-dbviterbi.o + +-all: $(PROGS) tRNAscanSE setpaths ++all: $(PROGS) tRNAscanSE + + covels-SE: $(OBJ) scan_main.o + $(CC) $(CFLAGS) $(RFLAGS) -o covels-SE scan_main.o $(OBJ) $(LIBS) +@@ -178,7 +179,7 @@ + @echo "" + @rm -f testrun.out + @echo "tRNAscan-SE -d -y -o testrun.out Demo/F22B7.fa" +- @if tRNAscan-SE -d -y -o testrun.out Demo/F22B7.fa; \ ++ @if ./tRNAscan-SE -d -y -o testrun.out Demo/F22B7.fa; \ + then echo ""; \ + else echo "tRNAscan-SE did NOT complete properly."; fi + @if diff testrun.out testrun.ref; \ |