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| author | Alexey Dokuchaev <danfe@FreeBSD.org> | 2014-10-13 11:01:51 +0000 |
|---|---|---|
| committer | Alexey Dokuchaev <danfe@FreeBSD.org> | 2014-10-13 11:01:51 +0000 |
| commit | 211de67db6d5bc1ecbee9f56146312649ae14786 (patch) | |
| tree | 27eb43c1931890a897d99da7f447c848bb3a6296 /biology/ugene | |
| parent | eb561bb79082e6510acc526205eb34cebd6b291c (diff) | |
| download | ports-211de67db6d5bc1ecbee9f56146312649ae14786.tar.gz ports-211de67db6d5bc1ecbee9f56146312649ae14786.zip | |
Notes
Diffstat (limited to 'biology/ugene')
| -rw-r--r-- | biology/ugene/Makefile | 8 | ||||
| -rw-r--r-- | biology/ugene/distinfo | 4 | ||||
| -rw-r--r-- | biology/ugene/pkg-plist | 5 |
3 files changed, 13 insertions, 4 deletions
diff --git a/biology/ugene/Makefile b/biology/ugene/Makefile index c284d2df992d..10366124cbc3 100644 --- a/biology/ugene/Makefile +++ b/biology/ugene/Makefile @@ -2,8 +2,7 @@ # $FreeBSD$ PORTNAME= ugene -DISTVERSION= 1.14.0 -PORTREVISION= 1 +DISTVERSION= 1.14.2 CATEGORIES= biology science MASTER_SITES= http://ugene.unipro.ru/downloads/ DISTFILES= ${DISTNAME}${EXTRACT_SUFX} QueryDesigner_UserManual.pdf \ @@ -75,5 +74,10 @@ post-patch: .for x in ugenecl ugeneui plugins_checker @${ECHO_CMD} 'LIBS += -lexecinfo' >> ${WRKSRC}/src/${x}/${x}.pro .endfor +# missing linefeeds at EOF irk gcc4.2 + @(cd ${WRKSRC}/src && ${FIND} -E . -type f -regex '.*\.(cpp|h)' | \ + while read f; do if [ "`${TAIL} -c 1 "$$f"`" ]; then \ + ${ECHO_CMD} >&2 "$${f#./} lacks newline at EOF, fixing"; \ + ${ECHO_CMD} >> "$$f"; fi; done) .include <bsd.port.post.mk> diff --git a/biology/ugene/distinfo b/biology/ugene/distinfo index dd384463de13..505e3811b67b 100644 --- a/biology/ugene/distinfo +++ b/biology/ugene/distinfo @@ -1,5 +1,5 @@ -SHA256 (ugene/ugene-1.14.0.tar.gz) = e54f67d54378fcb375029267bc1ae75aec5e6e4e7c9977184be5865475ef2c42 -SIZE (ugene/ugene-1.14.0.tar.gz) = 19777919 +SHA256 (ugene/ugene-1.14.2.tar.gz) = deea01b9a5386094fa2d7e48db9d529afd9520ed0d6bc5bb2fb40493ae861a3a +SIZE (ugene/ugene-1.14.2.tar.gz) = 19800763 SHA256 (ugene/QueryDesigner_UserManual.pdf) = 2add11809ecc3225abfef417ad8d5435fed76a662081f461abb36e3d4b31cfcd SIZE (ugene/QueryDesigner_UserManual.pdf) = 824781 SHA256 (ugene/UniproUGENE_UserManual.pdf) = c4aa20246988978c6b40a06f7753f78d204ee3155cb8876a3d665b9ebf5641db diff --git a/biology/ugene/pkg-plist b/biology/ugene/pkg-plist index f1822c8a7201..32f15e7f491f 100644 --- a/biology/ugene/pkg-plist +++ b/biology/ugene/pkg-plist @@ -1416,13 +1416,18 @@ share/pixmaps/ugene.xpm %%DATADIR%%/workflow_samples/NGS/tuxedo.uwl %%DATADIR%%/workflow_samples/Scenarios/extract_consensus.uwl %%DATADIR%%/workflow_samples/Scenarios/filter_matched.uwl +%%DATADIR%%/workflow_samples/Scenarios/find_inverted_repeats.uwl %%DATADIR%%/workflow_samples/Scenarios/find_sequences.uwl %%DATADIR%%/workflow_samples/Scenarios/gene_by_gene_report.uwl %%DATADIR%%/workflow_samples/Scenarios/merge_sequence_annotation.uwl +%%DATADIR%%/workflow_samples/Scenarios/remote_blasting.uwl +%%DATADIR%%/workflow_samples/Scenarios/translate_seq_and_compl.uwl %%DATADIR%%/workflow_samples/Transcriptomics/SearchTFBS.uwl %%DATADIR%%/workflow_samples/users/CASAVA FASTQ filter.usa %%DATADIR%%/workflow_samples/users/Dump sequence info.usa %%DATADIR%%/workflow_samples/users/FASTQ Trimmer.usa +%%DATADIR%%/workflow_samples/users/Get the first half of sequence.usa +%%DATADIR%%/workflow_samples/users/Get the second half of sequence.usa %%DATADIR%%/workflow_samples/users/LinkData Fetch.usa %%DATADIR%%/workflow_samples/users/QualityFilter.usa @dirrm %%DATADIR%%/workflow_samples/users |