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| author | Joseph Mingrone <jrm@FreeBSD.org> | 2018-10-20 12:21:15 +0000 |
|---|---|---|
| committer | Joseph Mingrone <jrm@FreeBSD.org> | 2018-10-20 12:21:15 +0000 |
| commit | 6c672c455fc7b318dedb0824dbd4c3af3013c673 (patch) | |
| tree | 7ce885d1f70c1e68d474ba460a38988077478e08 /biology | |
| parent | 16e19f6313894e6d4648d09e7346641b20dbe756 (diff) | |
| download | ports-6c672c455fc7b318dedb0824dbd4c3af3013c673.tar.gz ports-6c672c455fc7b318dedb0824dbd4c3af3013c673.zip | |
biology/hyphy: Update to version 2.3.14.16
This pulls in fixes after the 2.3.14 release.
Upstream changes for version 2.3.14:
https://github.com/veg/hyphy/releases/tag/2.3.14
Subsequent fixes:
https://github.com/veg/hyphy/commit/1ecac31
https://github.com/veg/hyphy/commit/bec6833
https://github.com/veg/hyphy/commit/9847438
https://github.com/veg/hyphy/commit/02dcedd
https://github.com/veg/hyphy/commit/8f44d3c
https://github.com/veg/hyphy/commit/5297c30
https://github.com/veg/hyphy/commit/3d88d3e
Notes
Notes:
svn path=/head/; revision=482495
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/hyphy/Makefile | 5 | ||||
| -rw-r--r-- | biology/hyphy/distinfo | 6 | ||||
| -rw-r--r-- | biology/hyphy/pkg-plist | 5 |
3 files changed, 11 insertions, 5 deletions
diff --git a/biology/hyphy/Makefile b/biology/hyphy/Makefile index 1efc4900f884..41fbf5bf9111 100644 --- a/biology/hyphy/Makefile +++ b/biology/hyphy/Makefile @@ -1,7 +1,8 @@ # $FreeBSD$ PORTNAME= hyphy -DISTVERSION= 2.3.13 +DISTVERSION= 2.3.14-16 +DISTVERSIONSUFFIX= -g3d88d3e6 CATEGORIES= biology MAINTAINER= jrm@FreeBSD.org @@ -18,4 +19,6 @@ USES= compiler:c++14-lang cmake:outsource localbase:ldflags ssl USE_GITHUB= yes GH_ACCOUNT= veg +CMAKE_ON= NOAVX + .include <bsd.port.mk> diff --git a/biology/hyphy/distinfo b/biology/hyphy/distinfo index 2c0018868de8..f3d352364292 100644 --- a/biology/hyphy/distinfo +++ b/biology/hyphy/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1527024059 -SHA256 (veg-hyphy-2.3.13_GH0.tar.gz) = 29b72574302c98d38a92d5316b9283caa80a54c3e74c5e278c5bc9ae3d3df499 -SIZE (veg-hyphy-2.3.13_GH0.tar.gz) = 7910770 +TIMESTAMP = 1540036335 +SHA256 (veg-hyphy-2.3.14-16-g3d88d3e6_GH0.tar.gz) = 459cd0a261ae5f31dc230847acbd294a4dc1e17fa69ef0c3db173c2b8808c826 +SIZE (veg-hyphy-2.3.14-16-g3d88d3e6_GH0.tar.gz) = 8041349 diff --git a/biology/hyphy/pkg-plist b/biology/hyphy/pkg-plist index c8265b5cbd14..3fcb6024fa31 100644 --- a/biology/hyphy/pkg-plist +++ b/biology/hyphy/pkg-plist @@ -237,7 +237,7 @@ lib/hyphy/TemplateBatchFiles/PositiveSelectionLI.bf lib/hyphy/TemplateBatchFiles/ProteinAnalyses/README_relative_prot_rates.md lib/hyphy/TemplateBatchFiles/ProteinAnalyses/relative_prot_rates.bf lib/hyphy/TemplateBatchFiles/QuickSelectionDetection-MEME-internal.bf -lib/hyphy/TemplateBatchFiles/QuickSelectionDetection.bf +lib/hyphy/TemplateBatchFiles/Deprecated/QuickSelectionDetection.bf lib/hyphy/TemplateBatchFiles/QuickSelectionDetectionMF.bf lib/hyphy/TemplateBatchFiles/RateClassCounter.bf lib/hyphy/TemplateBatchFiles/ReduceDataSetMatrix.bf @@ -267,6 +267,8 @@ lib/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX-SRV.bf lib/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX.bf lib/hyphy/TemplateBatchFiles/SelectionAnalyses/SLAC.bf lib/hyphy/TemplateBatchFiles/SelectionAnalyses/Simulators/BUSTED.bf +lib/hyphy/TemplateBatchFiles/SelectionAnalyses/Simulators/FADE.bf +lib/hyphy/TemplateBatchFiles/SelectionAnalyses/aBSREL-NS.bf lib/hyphy/TemplateBatchFiles/SelectionAnalyses/aBSREL.bf lib/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/grid_compute.ibf lib/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/io_functions.ibf @@ -504,6 +506,7 @@ lib/hyphy/TemplateBatchFiles/libv3/models/rate_variation.bf lib/hyphy/TemplateBatchFiles/libv3/stats.bf lib/hyphy/TemplateBatchFiles/libv3/tasks/alignments.bf lib/hyphy/TemplateBatchFiles/libv3/tasks/ancestral.bf +lib/hyphy/TemplateBatchFiles/libv3/tasks/bayesgraph.ibf lib/hyphy/TemplateBatchFiles/libv3/tasks/estimators.bf lib/hyphy/TemplateBatchFiles/libv3/tasks/genetic_code.bf lib/hyphy/TemplateBatchFiles/libv3/tasks/mpi.bf |