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authorAkinori MUSHA <knu@FreeBSD.org>2002-03-12 23:12:03 +0000
committerAkinori MUSHA <knu@FreeBSD.org>2002-03-12 23:12:03 +0000
commit291dac941cae3359d3a5ba2e6b6fa56f0dc69161 (patch)
tree17c2fe201439450c59d1ec661a27792e72fc2da2 /biology
parentf69ec4e9fab561e079e127502ce71563795537bb (diff)
downloadports-291dac941cae3359d3a5ba2e6b6fa56f0dc69161.tar.gz
ports-291dac941cae3359d3a5ba2e6b6fa56f0dc69161.zip
Notes
Diffstat (limited to 'biology')
-rw-r--r--biology/ruby-bio/Makefile4
-rw-r--r--biology/ruby-bio/distinfo2
-rw-r--r--biology/ruby-bio/pkg-plist10
3 files changed, 13 insertions, 3 deletions
diff --git a/biology/ruby-bio/Makefile b/biology/ruby-bio/Makefile
index a874105c9c21..5e8c73271a83 100644
--- a/biology/ruby-bio/Makefile
+++ b/biology/ruby-bio/Makefile
@@ -6,7 +6,7 @@
#
PORTNAME= bio
-PORTVERSION= 0.3.3
+PORTVERSION= 0.3.5
CATEGORIES= biology ruby
MASTER_SITES= ftp://ftp.bioruby.org/bioruby/src/
MASTER_SITE_SUBDIR= knu
@@ -28,7 +28,7 @@ do-install:
${MKDIR} ${RUBY_EXAMPLESDIR}/${PORTNAME}
${CP} -R ${WRKSRC}/sample/ ${RUBY_EXAMPLESDIR}/${PORTNAME}/
${MKDIR} ${RUBY_DOCDIR}/${PORTNAME}/ja
- ${CP} -R ${WRKSRC}/README ${RUBY_DOCDIR}/${PORTNAME}/
+ ${INSTALL_DATA} ${WRKSRC}/ChangeLog ${WRKSRC}/README ${RUBY_DOCDIR}/${PORTNAME}/
${INSTALL_DATA} ${WRKSRC}/doc/*.ja ${RUBY_DOCDIR}/${PORTNAME}/ja/
.endif
diff --git a/biology/ruby-bio/distinfo b/biology/ruby-bio/distinfo
index 75f7b5305395..713016267be8 100644
--- a/biology/ruby-bio/distinfo
+++ b/biology/ruby-bio/distinfo
@@ -1 +1 @@
-MD5 (ruby/bioruby-0.3.3.tgz) = 47e96795361c1f0299d07ea678b15bd0
+MD5 (ruby/bioruby-0.3.5.tgz) = 75e3a72a00051e32086200090a3e3a21
diff --git a/biology/ruby-bio/pkg-plist b/biology/ruby-bio/pkg-plist
index 0601cc40ffa6..5b2b13b51ef3 100644
--- a/biology/ruby-bio/pkg-plist
+++ b/biology/ruby-bio/pkg-plist
@@ -1,3 +1,4 @@
+bin/biofetch
bin/dbget
%%RUBY_SITELIBDIR%%/bio.rb
%%RUBY_SITELIBDIR%%/bio/appl/blast.rb
@@ -28,9 +29,15 @@ bin/dbget
%%RUBY_SITELIBDIR%%/bio/db/swissprot.rb
%%RUBY_SITELIBDIR%%/bio/db/transfac.rb
%%RUBY_SITELIBDIR%%/bio/db/trembl.rb
+%%RUBY_SITELIBDIR%%/bio/feature.rb
+%%RUBY_SITELIBDIR%%/bio/id.rb
+%%RUBY_SITELIBDIR%%/bio/io/brdb.rb
%%RUBY_SITELIBDIR%%/bio/io/dbget.rb
+%%RUBY_SITELIBDIR%%/bio/io/fetch.rb
%%RUBY_SITELIBDIR%%/bio/io/flatfile.rb
%%RUBY_SITELIBDIR%%/bio/io/pubmed.rb
+%%RUBY_SITELIBDIR%%/bio/io/registry.rb
+%%RUBY_SITELIBDIR%%/bio/io/sql.rb
%%RUBY_SITELIBDIR%%/bio/location.rb
%%RUBY_SITELIBDIR%%/bio/matrix.rb
%%RUBY_SITELIBDIR%%/bio/pathway.rb
@@ -45,6 +52,7 @@ bin/dbget
@dirrm %%RUBY_SITELIBDIR%%/bio/io
@dirrm %%RUBY_SITELIBDIR%%/bio/util
@dirrm %%RUBY_SITELIBDIR%%/bio
+%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/biofetch.rb
%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/fasta2tab.rb
%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/fsplit.rb
%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/gb2fasta.rb
@@ -52,12 +60,14 @@ bin/dbget
%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/genes2nuc.rb
%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/genes2pep.rb
%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/genes2tab.rb
+%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/genome2rb.rb
%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/genome2tab.rb
%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/gt2fasta.rb
%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/ssearch2tab.rb
%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/tfastx2tab.rb
%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/bio/vs-genes.rb
%%PORTDOCS%%@dirrm %%RUBY_EXAMPLESDIR%%/bio
+%%PORTDOCS%%%%RUBY_DOCDIR%%/bio/ChangeLog
%%PORTDOCS%%%%RUBY_DOCDIR%%/bio/README
%%PORTDOCS%%%%RUBY_DOCDIR%%/bio/ja/BioRuby.rd.ja
%%PORTDOCS%%%%RUBY_DOCDIR%%/bio/ja/Design.rd.ja