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authorMathieu Arnold <mat@FreeBSD.org>2013-08-02 18:52:07 +0000
committerMathieu Arnold <mat@FreeBSD.org>2013-08-02 18:52:07 +0000
commit4819ca343bfee8a3b54e7ff3ac26d280d1c1696f (patch)
treea4a613f80a0e443c044c2319e43ce75e14c50813 /biology
parent49b7a7d4a4e27031eeb48b2c26d102a7f8527de9 (diff)
downloadports-4819ca343bfee8a3b54e7ff3ac26d280d1c1696f.tar.gz
ports-4819ca343bfee8a3b54e7ff3ac26d280d1c1696f.zip
Notes
Diffstat (limited to 'biology')
-rw-r--r--biology/p5-AcePerl/Makefile9
-rw-r--r--biology/p5-Bio-Das-Lite/Makefile9
-rw-r--r--biology/p5-Bio-Das/Makefile9
-rw-r--r--biology/p5-Bio-Glite/Makefile3
-rw-r--r--biology/p5-Bio-Graphics/Makefile4
-rw-r--r--biology/p5-Bio-MAGETAB/Makefile3
-rw-r--r--biology/p5-Bio-NEXUS/Makefile3
-rw-r--r--biology/p5-Bio-Phylo/Makefile3
8 files changed, 19 insertions, 24 deletions
diff --git a/biology/p5-AcePerl/Makefile b/biology/p5-AcePerl/Makefile
index bf670c57184f..d8707a71ce82 100644
--- a/biology/p5-AcePerl/Makefile
+++ b/biology/p5-AcePerl/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: p5-AcePerl
-# Date created: 26 July 2000
-# Whom: Johann Visagie <johann@egenetics.com>
-#
+# Created by: Johann Visagie <johann@egenetics.com>
# $FreeBSD$
-#
PORTNAME= AcePerl
PORTVERSION= 1.92
@@ -21,7 +17,8 @@ BUILD_DEPENDS:= ${RUN_DEPENDS}
MAKE_JOBS_UNSAFE= yes
-PERL_CONFIGURE= yes
+USES= perl5
+USE_PERL5= configure
MAN1= ace.pl.1
MAN3= Ace.3 Ace::Browser::AceSubs.3 Ace::Browser::SearchSubs.3 \
diff --git a/biology/p5-Bio-Das-Lite/Makefile b/biology/p5-Bio-Das-Lite/Makefile
index b45abded7bf3..8b45ce3a499f 100644
--- a/biology/p5-Bio-Das-Lite/Makefile
+++ b/biology/p5-Bio-Das-Lite/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: p5-Bio-Das-Lite
-# Date created: 26 Feb, 2010
-# Whom: Wen Heping <wen@FreeBSD.org>
-#
+# Created by: Wen Heping <wen@FreeBSD.org>
# $FreeBSD$
-#
PORTNAME= Bio-Das-Lite
PORTVERSION= 2.11
@@ -20,7 +16,8 @@ BUILD_DEPENDS= p5-Readonly>=1.03:${PORTSDIR}/devel/p5-Readonly \
RUN_DEPENDS:= ${BUILD_DEPENDS}
TEST_DEPENDS= p5-Test-Simple>0.8:${PORTSDIR}/devel/p5-Test-Simple
-PERL_MODBUILD= YES
+USES= perl5
+USE_PERL5= modbuild
MAN3= Bio::Das::Lite.3
diff --git a/biology/p5-Bio-Das/Makefile b/biology/p5-Bio-Das/Makefile
index a40cf4b72a86..27a3fda93f13 100644
--- a/biology/p5-Bio-Das/Makefile
+++ b/biology/p5-Bio-Das/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: p5-Bio-Das
-# Date created: 17 January 2005
-# Whom: Razi Khaja <razi@genet.sickkids.on.ca>
-#
+# Created by: Razi Khaja <razi@genet.sickkids.on.ca>
# $FreeBSD$
-#
PORTNAME= Bio-Das
PORTVERSION= 1.17
@@ -20,7 +16,8 @@ RUN_DEPENDS= p5-HTML-Parser>=3:${PORTSDIR}/www/p5-HTML-Parser \
p5-libwww>=5:${PORTSDIR}/www/p5-libwww
BUILD_DEPENDS:= ${RUN_DEPENDS}
-PERL_CONFIGURE= YES
+USES= perl5
+USE_PERL5= configure
MAN3= Bio::Das.3 Bio::Das::AGPServer::Config.3 Bio::Das::AGPServer::Daemon.3 \
Bio::Das::AGPServer::Parser.3 Bio::Das::AGPServer::SQLStorage.3 \
diff --git a/biology/p5-Bio-Glite/Makefile b/biology/p5-Bio-Glite/Makefile
index 3b3231605fb6..87d806a97994 100644
--- a/biology/p5-Bio-Glite/Makefile
+++ b/biology/p5-Bio-Glite/Makefile
@@ -14,7 +14,8 @@ COMMENT= Perl Interface to G-language
BUILD_DEPENDS= p5-libwww>=5:${PORTSDIR}/www/p5-libwww
RUN_DEPENDS:= ${BUILD_DEPENDS}
-PERL_CONFIGURE= YES
+USES= perl5
+USE_PERL5= configure
MAN3= Bio::Glite.3
diff --git a/biology/p5-Bio-Graphics/Makefile b/biology/p5-Bio-Graphics/Makefile
index 5415e4370be7..6b0e1019cecd 100644
--- a/biology/p5-Bio-Graphics/Makefile
+++ b/biology/p5-Bio-Graphics/Makefile
@@ -1,6 +1,5 @@
# Created by: wen@FreeBSD.org
# $FreeBSD$
-#
PORTNAME= Bio-Graphics
PORTVERSION= 2.37
@@ -21,7 +20,8 @@ BUILD_DEPENDS= p5-Bio-SCF>=1.01:${PORTSDIR}/biology/p5-Bio-SCF \
p5-bioperl>=1.6.0:${PORTSDIR}/biology/p5-bioperl
RUN_DEPENDS:= ${BUILD_DEPENDS}
-PERL_CONFIGURE= yes
+USES= perl5
+USE_PERL5= configure
MAN1= contig_draw.pl.1 \
feature_draw.pl.1 \
diff --git a/biology/p5-Bio-MAGETAB/Makefile b/biology/p5-Bio-MAGETAB/Makefile
index d15fa17c135a..37d33cf68720 100644
--- a/biology/p5-Bio-MAGETAB/Makefile
+++ b/biology/p5-Bio-MAGETAB/Makefile
@@ -26,7 +26,8 @@ BUILD_DEPENDS= p5-Date-Manip>=5.44:${PORTSDIR}/devel/p5-Date-Manip \
RUN_DEPENDS:= ${BUILD_DEPENDS}
TEST_DEPENDS= p5-Test-Exception>=0.26:${PORTSDIR}/devel/p5-Test-Exception
-PERL_CONFIGURE= yes
+USES= perl5
+USE_PERL5= configure
MAN3= Bio::MAGETAB.3 \
Bio::MAGETAB::ArrayDesign.3 \
diff --git a/biology/p5-Bio-NEXUS/Makefile b/biology/p5-Bio-NEXUS/Makefile
index 97a0b7abe8bc..31a50449e440 100644
--- a/biology/p5-Bio-NEXUS/Makefile
+++ b/biology/p5-Bio-NEXUS/Makefile
@@ -17,7 +17,8 @@ TEST_DEPENDS= p5-Test-Deep>=0.106:${PORTSDIR}/devel/p5-Test-Deep \
p5-Test-Pod>=0:${PORTSDIR}/devel/p5-Test-Pod \
p5-Test-Pod-Coverage>=0:${PORTSDIR}/devel/p5-Test-Pod-Coverage
-PERL_CONFIGURE= yes
+USES= perl5
+USE_PERL5= configure
MAN1= nex2text_tree.pl.1 \
nexplot.pl.1 \
diff --git a/biology/p5-Bio-Phylo/Makefile b/biology/p5-Bio-Phylo/Makefile
index 7affa42f5e08..90d546eaa382 100644
--- a/biology/p5-Bio-Phylo/Makefile
+++ b/biology/p5-Bio-Phylo/Makefile
@@ -27,7 +27,8 @@ BUILD_DEPENDS= p5-GD>=0:${PORTSDIR}/graphics/p5-GD \
RUN_DEPENDS:= ${BUILD_DEPENDS}
TEST_DEPENDS= p5-JSON>=0:${PORTSDIR}/converters/p5-JSON
-PERL_CONFIGURE= yes
+USES= perl5
+USE_PERL5= configure
MAN3= Bio::Phylo.3 \
Bio::Phylo::EvolutionaryModels.3 \