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| author | Jason Evans <jasone@FreeBSD.org> | 2009-06-10 01:25:02 +0000 |
|---|---|---|
| committer | Jason Evans <jasone@FreeBSD.org> | 2009-06-10 01:25:02 +0000 |
| commit | 91fb724efdece09d436b391efc1ced902a51d7b5 (patch) | |
| tree | e12107290daaf1b74ba0c889f1ecdec72dfcd82b /biology | |
| parent | c1d5689da295ba72b3619930866f5e5da9ee18be (diff) | |
| download | ports-91fb724efdece09d436b391efc1ced902a51d7b5.tar.gz ports-91fb724efdece09d436b391efc1ced902a51d7b5.zip | |
Notes
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/crux/Makefile | 7 | ||||
| -rw-r--r-- | biology/crux/pkg-plist | 1 |
2 files changed, 6 insertions, 2 deletions
diff --git a/biology/crux/Makefile b/biology/crux/Makefile index fc9b8c38ae2d..437c646d1308 100644 --- a/biology/crux/Makefile +++ b/biology/crux/Makefile @@ -16,7 +16,7 @@ COMMENT= Software toolkit for phylogenetic inference USE_BZIP2= yes GNU_CONFIGURE= yes CONFIGURE_ARGS=--with-python=${PYTHON_CMD} --disable-mpi -CONFIGURE_ENV+=EXTRA_CFLAGS="-std=gnu99" +USE_CSTD= gnu99 USE_GMAKE= yes USE_PYTHON= 2.5+ @@ -25,8 +25,11 @@ OPTIONS= SYS_LINALG "Enable system ATLAS/LAPACK" Off .include <bsd.port.pre.mk> .if defined(WITH_SYS_LINALG) +CPPFLAGS+= -I${LOCALBASE}/include +LDFLAGS+= -L${LOCALBASE}/lib CONFIGURE_ARGS+= --enable-sys-linalg -RUN_DEPENDS+= libatlas:${PORTSDIR}/math/atlas +CONFIGURE_ENV+= CPPFLAGS="${CPPFLAGS}" LDFLAGS="${LDFLAGS}" +LIB_DEPENDS+= atlas.2:${PORTSDIR}/math/atlas .else CONFIGURE_ARGS+= --disable-sys-linalg USE_FORTRAN= yes diff --git a/biology/crux/pkg-plist b/biology/crux/pkg-plist index a7e4291e4b56..2b8bd492ac0b 100644 --- a/biology/crux/pkg-plist +++ b/biology/crux/pkg-plist @@ -51,6 +51,7 @@ bin/MrRogers %%PYTHON_SITELIBDIR%%/Crux/include/Crux/libm.pxd %%PYTHON_SITELIBDIR%%/Crux/include/Crux/libc.pxd %%PYTHON_SITELIBDIR%%/Crux/include/Parsing.pxd +%%PYTHON_SITELIBDIR%%/Parsing.so share/Crux/lib/libCx.so share/Crux/parsers/Fasta.log share/Crux/parsers/Fasta.pickle |