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| author | Jason W. Bacon <jwb@FreeBSD.org> | 2019-05-05 14:56:07 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2019-05-05 14:56:07 +0000 |
| commit | 21a82c027a21b2b497525760a8d49d2b2de94fc5 (patch) | |
| tree | 2bf734b1a9f277b889949044dc418dca5ec62a4b /biology | |
| parent | 490f8e029a16df2cb79208a4e82f71c28a80d263 (diff) | |
| download | ports-21a82c027a21b2b497525760a8d49d2b2de94fc5.tar.gz ports-21a82c027a21b2b497525760a8d49d2b2de94fc5.zip | |
Notes
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/minimap2/Makefile | 2 | ||||
| -rw-r--r-- | biology/minimap2/distinfo | 6 | ||||
| -rw-r--r-- | biology/minimap2/files/patch-Makefile | 8 |
3 files changed, 9 insertions, 7 deletions
diff --git a/biology/minimap2/Makefile b/biology/minimap2/Makefile index 528872dd26b8..548aa2084b45 100644 --- a/biology/minimap2/Makefile +++ b/biology/minimap2/Makefile @@ -2,7 +2,7 @@ PORTNAME= minimap2 DISTVERSIONPREFIX= v -DISTVERSION= 2.16 +DISTVERSION= 2.17 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/minimap2/distinfo b/biology/minimap2/distinfo index 4167b37be746..aa8229da44d3 100644 --- a/biology/minimap2/distinfo +++ b/biology/minimap2/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1555901297 -SHA256 (lh3-minimap2-v2.16_GH0.tar.gz) = 9d4f1c9f1c2b29c2560b7ad53b2210dabd82161a0f88184f423534bd289433c3 -SIZE (lh3-minimap2-v2.16_GH0.tar.gz) = 221287 +TIMESTAMP = 1557067380 +SHA256 (lh3-minimap2-v2.17_GH0.tar.gz) = 0a3eaa3ef3d9f9e41f48199cc4aac0508366ac644fc3e8fe05e3463acd23d20b +SIZE (lh3-minimap2-v2.17_GH0.tar.gz) = 224006 diff --git a/biology/minimap2/files/patch-Makefile b/biology/minimap2/files/patch-Makefile index 19bf99b1325d..f9008ea92a76 100644 --- a/biology/minimap2/files/patch-Makefile +++ b/biology/minimap2/files/patch-Makefile @@ -1,8 +1,10 @@ ---- Makefile.orig 2019-02-28 20:49:24 UTC +--- Makefile.orig 2019-05-05 03:49:17 UTC +++ Makefile -@@ -1,11 +1,19 @@ +@@ -1,11 +1,21 @@ -CFLAGS= -g -Wall -O2 -Wc++-compat #-Wextra -CPPFLAGS= -DHAVE_KALLOC ++# Patches using ?= and adding install target were rejected by developers ++# https://github.com/lh3/minimap2/issues/388 +CFLAGS?= -g -Wall -O2 +CFLAGS+= -Wc++-compat #-Wextra +CPPFLAGS+= -DHAVE_KALLOC @@ -22,7 +24,7 @@ ifeq ($(arm_neon),) # if arm_neon is not defined ifeq ($(sse2only),) # if sse2only is not defined OBJS+=ksw2_extz2_sse41.o ksw2_extd2_sse41.o ksw2_exts2_sse41.o ksw2_extz2_sse2.o ksw2_extd2_sse2.o ksw2_exts2_sse2.o ksw2_dispatch.o -@@ -84,6 +92,15 @@ ksw2_exts2_neon.o:ksw2_exts2_sse.c ksw2.h kalloc.h +@@ -84,6 +94,15 @@ ksw2_exts2_neon.o:ksw2_exts2_sse.c ksw2.h kalloc.h $(CC) -c $(CFLAGS) $(CPPFLAGS) -DKSW_SSE2_ONLY -D__SSE2__ $(INCLUDES) $< -o $@ # other non-file targets |