diff options
| author | Wen Heping <wen@FreeBSD.org> | 2009-11-18 05:53:17 +0000 |
|---|---|---|
| committer | Wen Heping <wen@FreeBSD.org> | 2009-11-18 05:53:17 +0000 |
| commit | 695ed5163e27743c1ee045d084880073ac98a9eb (patch) | |
| tree | adc0840df83dad04a453087c0af7ecbd85ab14e3 /biology | |
| parent | c494b65466b6ddbe2e0e24e4c3047383acfdcfa3 (diff) | |
| download | ports-695ed5163e27743c1ee045d084880073ac98a9eb.tar.gz ports-695ed5163e27743c1ee045d084880073ac98a9eb.zip | |
Notes
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/Makefile | 1 | ||||
| -rw-r--r-- | biology/pyfasta/Makefile | 22 | ||||
| -rw-r--r-- | biology/pyfasta/distinfo | 3 | ||||
| -rw-r--r-- | biology/pyfasta/pkg-descr | 4 | ||||
| -rw-r--r-- | biology/pyfasta/pkg-plist | 22 |
5 files changed, 52 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile index 6e84fdaf57b9..80a378163120 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -81,6 +81,7 @@ SUBDIR += psi88 SUBDIR += py-biopython SUBDIR += pycogent + SUBDIR += pyfasta SUBDIR += pymol SUBDIR += rasmol SUBDIR += recombine diff --git a/biology/pyfasta/Makefile b/biology/pyfasta/Makefile new file mode 100644 index 000000000000..6c819734c88c --- /dev/null +++ b/biology/pyfasta/Makefile @@ -0,0 +1,22 @@ +# Ports collection makefile for: pyfasta +# Date created: 18 Nov, 2009 +# Whom: Wen Heping <wen@FreeBSD.org> +# +# $FreeBSD$ +# + +PORTNAME= pyfasta +PORTVERSION= 0.3.1 +CATEGORIES= biology python +MASTER_SITES= CHEESESHOP + +MAINTAINER= wen@FreeBSD.org +COMMENT= Fast, memory-efficient, pythonic access to fasta sequence files + +BUILD_DEPENDS= ${PYNUMPY} +RUN_DEPENDS= ${BUILD_DEPENDS} + +USE_PYTHON= yes +USE_PYDISTUTILS= easy_install + +.include <bsd.port.mk> diff --git a/biology/pyfasta/distinfo b/biology/pyfasta/distinfo new file mode 100644 index 000000000000..4de0b53c89e2 --- /dev/null +++ b/biology/pyfasta/distinfo @@ -0,0 +1,3 @@ +MD5 (pyfasta-0.3.1.tar.gz) = 6ae284d33c4072779aa1dbbb5acd9855 +SHA256 (pyfasta-0.3.1.tar.gz) = 20d907991f96b525e8257569efa4a5b10b02ceda39fe034c36646257ef366874 +SIZE (pyfasta-0.3.1.tar.gz) = 10273 diff --git a/biology/pyfasta/pkg-descr b/biology/pyfasta/pkg-descr new file mode 100644 index 000000000000..2a027c036a75 --- /dev/null +++ b/biology/pyfasta/pkg-descr @@ -0,0 +1,4 @@ +pyfasta is a python module for fast, memory-efficient, pythonic +access to fasta sequence files. + +WWW: http://bitbucket.org/brentp/biostuff/src/ diff --git a/biology/pyfasta/pkg-plist b/biology/pyfasta/pkg-plist new file mode 100644 index 000000000000..8d08a4a40a26 --- /dev/null +++ b/biology/pyfasta/pkg-plist @@ -0,0 +1,22 @@ +bin/pyfasta +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/PKG-INFO +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/SOURCES.txt +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/dependency_links.txt +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/entry_points.txt +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/not-zip-safe +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/top_level.txt +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/pyfasta/__init__.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/pyfasta/__init__.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/pyfasta/__init__.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/pyfasta/fasta.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/pyfasta/fasta.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/pyfasta/fasta.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/pyfasta/backends.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/pyfasta/backends.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/pyfasta/backends.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/pyfasta/split_fasta.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/pyfasta/split_fasta.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/pyfasta/split_fasta.pyo +@dirrm %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/pyfasta +@dirrm %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO +@dirrm %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%% |