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authorDirk Meyer <dinoex@FreeBSD.org>2010-05-30 12:28:39 +0000
committerDirk Meyer <dinoex@FreeBSD.org>2010-05-30 12:28:39 +0000
commitca8e128e6212bd33d5de26a9bc7bec0bc4359156 (patch)
tree254262630d86e6b617abfedbdb7461dd9b45418d /biology
parentec46bb88d18c00dd1c9a3e3bcc69238668068cd2 (diff)
downloadports-ca8e128e6212bd33d5de26a9bc7bec0bc4359156.tar.gz
ports-ca8e128e6212bd33d5de26a9bc7bec0bc4359156.zip
Notes
Diffstat (limited to 'biology')
-rw-r--r--biology/adun/Makefile1
-rw-r--r--biology/adun/pkg-plist620
-rw-r--r--biology/biococoa/Makefile1
-rw-r--r--biology/biococoa/pkg-plist16
4 files changed, 318 insertions, 320 deletions
diff --git a/biology/adun/Makefile b/biology/adun/Makefile
index 97a1e7ce6f16..de8b97392680 100644
--- a/biology/adun/Makefile
+++ b/biology/adun/Makefile
@@ -17,7 +17,6 @@ COMMENT= Molecular Simulator for GNUstep
LIB_DEPENDS+= gsl.15:${PORTSDIR}/math/gsl
USE_GNUSTEP= yes
-USE_GNUSTEP_PREFIX= yes
USE_GNUSTEP_BACK= yes
USE_GNUSTEP_BUILD= yes
USE_GNUSTEP_INSTALL= yes
diff --git a/biology/adun/pkg-plist b/biology/adun/pkg-plist
index 82ca3762dc69..82dde3984c9b 100644
--- a/biology/adun/pkg-plist
+++ b/biology/adun/pkg-plist
@@ -1,310 +1,310 @@
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-Local/Applications/UL.app/Resources/Converter.gorm/keyedobjects.nib
-Local/Applications/UL.app/Resources/Converter.gorm/objects.gorm
-Local/Applications/UL.app/Resources/CreateAttributePanel.gorm/data.classes
-Local/Applications/UL.app/Resources/CreateAttributePanel.gorm/data.info
-Local/Applications/UL.app/Resources/CreateAttributePanel.gorm/objects.gorm
-Local/Applications/UL.app/Resources/DatabasePanel.gorm/classes.nib
-Local/Applications/UL.app/Resources/DatabasePanel.gorm/data.classes
-Local/Applications/UL.app/Resources/DatabasePanel.gorm/data.info
-Local/Applications/UL.app/Resources/DatabasePanel.gorm/info.nib
-Local/Applications/UL.app/Resources/DatabasePanel.gorm/keyedobjects.nib
-Local/Applications/UL.app/Resources/DatabasePanel.gorm/objects.gorm
-Local/Applications/UL.app/Resources/ExportPanel.gorm/data.classes
-Local/Applications/UL.app/Resources/ExportPanel.gorm/data.info
-Local/Applications/UL.app/Resources/ExportPanel.gorm/objects.gorm
-Local/Applications/UL.app/Resources/H2O.pdb
-Local/Applications/UL.app/Resources/Info-gnustep.plist
-Local/Applications/UL.app/Resources/Options.gorm/data.classes
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-Local/Applications/UL.app/Resources/Options.gorm/objects.gorm
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-Local/Applications/UL.app/Resources/Preferences.gorm/data.info
-Local/Applications/UL.app/Resources/Preferences.gorm/objects.gorm
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-Local/Applications/UL.app/Resources/ProgressPanel.gorm/data.classes
-Local/Applications/UL.app/Resources/ProgressPanel.gorm/data.info
-Local/Applications/UL.app/Resources/ProgressPanel.gorm/info.nib
-Local/Applications/UL.app/Resources/ProgressPanel.gorm/keyedobjects.nib
-Local/Applications/UL.app/Resources/ProgressPanel.gorm/objects.gorm
-Local/Applications/UL.app/Resources/QuickStartFiles/1BK2
-Local/Applications/UL.app/Resources/QuickStartFiles/ContainerTemplate
-Local/Applications/UL.app/Resources/QuickStartFiles/ExplicitSolventTemplate
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-Local/Applications/UL.app/Resources/QuickStartFiles/GasPhaseTemplate
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+GNUstep/Local/Library/Frameworks/ULFramework.framework/Versions/%%MAJORLIBVERSION4%%/Resources/ForceFields/ForceFields.plist
+GNUstep/Local/Library/Frameworks/ULFramework.framework/Versions/%%MAJORLIBVERSION4%%/Resources/Info-gnustep.plist
+GNUstep/Local/Library/Frameworks/ULFramework.framework/Versions/%%MAJORLIBVERSION4%%/Resources/ScriptingInfo.plist
+GNUstep/Local/Library/Frameworks/ULFramework.framework/Versions/%%MAJORLIBVERSION4%%/Resources/Version
+GNUstep/Local/Library/Frameworks/ULFramework.framework/Versions/%%MAJORLIBVERSION4%%/Resources/iupacPdbMap.plist
+GNUstep/Local/Library/Frameworks/ULFramework.framework/Versions/%%MAJORLIBVERSION4%%/Resources/objectTemplates.plist
+GNUstep/Local/Library/Frameworks/ULFramework.framework/Versions/%%MAJORLIBVERSION4%%/Resources/pdbBuilderOptions.plist
+GNUstep/Local/Library/Frameworks/ULFramework.framework/Versions/%%MAJORLIBVERSION4%%/Resources/pdbNameMap.plist
+GNUstep/Local/Library/Frameworks/ULFramework.framework/Versions/%%MAJORLIBVERSION4%%/ULFramework
+GNUstep/Local/Library/Frameworks/ULFramework.framework/Versions/%%MAJORLIBVERSION4%%/libULFramework.so
+GNUstep/Local/Library/Frameworks/ULFramework.framework/Versions/%%MAJORLIBVERSION4%%/libULFramework.so.%%MAJORLIBVERSION4%%
+GNUstep/Local/Library/Frameworks/ULFramework.framework/Versions/%%MAJORLIBVERSION4%%/libULFramework.so.%%LIBVERSION4%%
+GNUstep/Local/Library/Frameworks/ULFramework.framework/Versions/Current
+GNUstep/Local/Library/Frameworks/ULFramework.framework/libULFramework.so
+GNUstep/Local/Library/Headers/AdunKernel
+GNUstep/Local/Library/Headers/Base/AdBaseFunctions.h
+GNUstep/Local/Library/Headers/Base/AdForceFieldFunctions.h
+GNUstep/Local/Library/Headers/Base/AdGeneralizedBornFunctions.h
+GNUstep/Local/Library/Headers/Base/AdLinkedList.h
+GNUstep/Local/Library/Headers/Base/AdMatrix.h
+GNUstep/Local/Library/Headers/Base/AdQuadratureFunctions.h
+GNUstep/Local/Library/Headers/Base/AdQuaternion.h
+GNUstep/Local/Library/Headers/Base/AdSorter.h
+GNUstep/Local/Library/Headers/Base/AdVector.h
+GNUstep/Local/Library/Headers/Base/AdVolumeFunctions.h
+GNUstep/Local/Library/Headers/MolTalk
+GNUstep/Local/Library/Headers/ULFramework
+GNUstep/Local/Library/Headers/XMLLib/ULAtomListNode.h
+GNUstep/Local/Library/Headers/XMLLib/ULClassNode.h
+GNUstep/Local/Library/Headers/XMLLib/ULConnectivityNode.h
+GNUstep/Local/Library/Headers/XMLLib/ULInteractionNode.h
+GNUstep/Local/Library/Headers/XMLLib/ULMolecularLibraryNode.h
+GNUstep/Local/Library/Headers/XMLLib/ULMolecularLibraryTree.h
+GNUstep/Local/Library/Headers/XMLLib/ULMoleculeClassNode.h
+GNUstep/Local/Library/Headers/XMLLib/ULMoleculeNode.h
+GNUstep/Local/Library/Headers/XMLLib/ULParameterNode.h
+GNUstep/Local/Library/Headers/XMLLib/ULParameterTree.h
+GNUstep/Local/Library/Headers/XMLLib/ULTopologyNode.h
+GNUstep/Local/Library/Headers/XMLLib/XMLDocumentRoot.h
+GNUstep/Local/Library/Headers/XMLLib/XMLLib.h
+GNUstep/Local/Library/Headers/XMLLib/XMLNode.h
+GNUstep/Local/Library/Libraries/libAdunKernel.so
+GNUstep/Local/Library/Libraries/libAdunKernel.so.%%MAJORLIBVERSION2%%
+GNUstep/Local/Library/Libraries/libAdunKernel.so.%%LIBVERSION2%%
+GNUstep/Local/Library/Libraries/libULFramework.so
+GNUstep/Local/Library/Libraries/libULFramework.so.%%MAJORLIBVERSION4%%
+GNUstep/Local/Library/Libraries/libULFramework.so.%%LIBVERSION4%%
+GNUstep/Local/Library/Libraries/libXMLLib.so
+GNUstep/Local/Library/Libraries/libXMLLib.so.%%MAJORLIBVERSION5%%
+GNUstep/Local/Library/Libraries/libXMLLib.so.%%LIBVERSION5%%
+GNUstep/Local/Library/Libraries/libadun_base.so
+GNUstep/Local/Library/Libraries/libadun_base.so.%%MAJORLIBVERSION%%
+GNUstep/Local/Library/Libraries/libadun_base.so.%%LIBVERSION%%
+GNUstep/Local/Library/Libraries/libMolTalk.so
+GNUstep/Local/Library/Libraries/libMolTalk.so.%%MAJORLIBVERSION3%%
+GNUstep/Local/Library/Libraries/libMolTalk.so.%%LIBVERSION3%%
+GNUstep/Local/Tools/AdunCore
+GNUstep/Local/Tools/AdunServer
+GNUstep/Local/Tools/InstallPlugin.py
+GNUstep/Local/Tools/UL
+@dirrmtry GNUstep/Local/Library/Tools/Resources/AdunCore
+@dirrmtry GNUstep/Local/Library/Tools/Resources
+@dirrmtry GNUstep/Local/Library/Tools
+@dirrm GNUstep/Local/Library/Headers/XMLLib
+@dirrmtry GNUstep/Local/Library/Headers/Framework/Protocols
+@dirrmtry GNUstep/Local/Library/Headers/Framework
+@dirrm GNUstep/Local/Library/Headers/Base
+@dirrm GNUstep/Local/Library/Frameworks/ULFramework.framework/Versions/%%MAJORLIBVERSION4%%/Resources/ForceFields/Enzymix
+@dirrm GNUstep/Local/Library/Frameworks/ULFramework.framework/Versions/%%MAJORLIBVERSION4%%/Resources/ForceFields/Charmm27
+@dirrm GNUstep/Local/Library/Frameworks/ULFramework.framework/Versions/%%MAJORLIBVERSION4%%/Resources/ForceFields/Amber
+@dirrm GNUstep/Local/Library/Frameworks/ULFramework.framework/Versions/%%MAJORLIBVERSION4%%/Resources/ForceFields
+@dirrm GNUstep/Local/Library/Frameworks/ULFramework.framework/Versions/%%MAJORLIBVERSION4%%/Resources
+@dirrm GNUstep/Local/Library/Frameworks/ULFramework.framework/Versions/%%MAJORLIBVERSION4%%/Headers
+@dirrm GNUstep/Local/Library/Frameworks/ULFramework.framework/Versions/%%MAJORLIBVERSION4%%
+@dirrm GNUstep/Local/Library/Frameworks/ULFramework.framework/Versions
+@dirrm GNUstep/Local/Library/Frameworks/ULFramework.framework
+@dirrm GNUstep/Local/Library/Frameworks/MolTalk.framework/Versions/%%MAJORLIBVERSION3%%/Resources
+@dirrm GNUstep/Local/Library/Frameworks/MolTalk.framework/Versions/%%MAJORLIBVERSION3%%/Headers
+@dirrm GNUstep/Local/Library/Frameworks/MolTalk.framework/Versions/%%MAJORLIBVERSION3%%
+@dirrm GNUstep/Local/Library/Frameworks/MolTalk.framework/Versions
+@dirrm GNUstep/Local/Library/Frameworks/MolTalk.framework
+@dirrm GNUstep/Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Resources
+@dirrm GNUstep/Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%/Headers
+@dirrm GNUstep/Local/Library/Frameworks/AdunKernel.framework/Versions/%%MAJORLIBVERSION2%%
+@dirrm GNUstep/Local/Library/Frameworks/AdunKernel.framework/Versions
+@dirrm GNUstep/Local/Library/Frameworks/AdunKernel.framework
+@dirrm GNUstep/Local/Applications/UL.app/Resources/UL.gorm
+@dirrm GNUstep/Local/Applications/UL.app/Resources/Template.gorm
+@dirrm GNUstep/Local/Applications/UL.app/Resources/System.gorm
+@dirrm GNUstep/Local/Applications/UL.app/Resources/Results.gorm
+@dirrm GNUstep/Local/Applications/UL.app/Resources/QuickStartFiles
+@dirrm GNUstep/Local/Applications/UL.app/Resources/ProgressPanel.gorm
+@dirrm GNUstep/Local/Applications/UL.app/Resources/Preferences.gorm
+@dirrm GNUstep/Local/Applications/UL.app/Resources/Options.gorm
+@dirrm GNUstep/Local/Applications/UL.app/Resources/ExportPanel.gorm
+@dirrm GNUstep/Local/Applications/UL.app/Resources/DatabasePanel.gorm
+@dirrm GNUstep/Local/Applications/UL.app/Resources/CreateAttributePanel.gorm
+@dirrm GNUstep/Local/Applications/UL.app/Resources/Converter.gorm
+@dirrm GNUstep/Local/Applications/UL.app/Resources
+@dirrm GNUstep/Local/Applications/UL.app
diff --git a/biology/biococoa/Makefile b/biology/biococoa/Makefile
index 7c0e81cb8aca..6e8647b8fbdb 100644
--- a/biology/biococoa/Makefile
+++ b/biology/biococoa/Makefile
@@ -17,7 +17,6 @@ MAINTAINER= dinoex@FreeBSD.org
COMMENT= Bioinformatics framework
USE_GNUSTEP= yes
-USE_GNUSTEP_PREFIX= yes
USE_GNUSTEP_BACK= yes
USE_GNUSTEP_BUILD= yes
USE_GNUSTEP_INSTALL= yes
diff --git a/biology/biococoa/pkg-plist b/biology/biococoa/pkg-plist
index eea54cb859a6..79f13f5f033f 100644
--- a/biology/biococoa/pkg-plist
+++ b/biology/biococoa/pkg-plist
@@ -1,8 +1,8 @@
-Local/Applications/BioCocoa.app/BioCocoa
-Local/Applications/BioCocoa.app/Resources/BioCocoa.desktop
-Local/Applications/BioCocoa.app/Resources/Info-gnustep.plist
-Local/Applications/BioCocoa.app/Resources/biococoa.tiff
-Local/Applications/BioCocoa.app/stamp.make
-Local/Tools/BioCocoa
-@dirrm Local/Applications/BioCocoa.app/Resources
-@dirrm Local/Applications/BioCocoa.app
+GNUstep/Local/Applications/BioCocoa.app/BioCocoa
+GNUstep/Local/Applications/BioCocoa.app/Resources/BioCocoa.desktop
+GNUstep/Local/Applications/BioCocoa.app/Resources/Info-gnustep.plist
+GNUstep/Local/Applications/BioCocoa.app/Resources/biococoa.tiff
+GNUstep/Local/Applications/BioCocoa.app/stamp.make
+GNUstep/Local/Tools/BioCocoa
+@dirrm GNUstep/Local/Applications/BioCocoa.app/Resources
+@dirrm GNUstep/Local/Applications/BioCocoa.app