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authorTobias C. Berner <tcberner@FreeBSD.org>2019-10-25 23:41:34 +0000
committerTobias C. Berner <tcberner@FreeBSD.org>2019-10-25 23:41:34 +0000
commit4e896a50f826a6dab94bd8c9a09d268a8aa48cf7 (patch)
tree10b7014104ebd0aaae8e4e402003e77848c50655 /biology
parent2c7110785aadaaf617e492105d7e1ffc032f75b3 (diff)
Notes
Diffstat (limited to 'biology')
-rw-r--r--biology/bcftools/Makefile1
-rw-r--r--biology/gemma/Makefile4
-rw-r--r--biology/viennarna/Makefile2
3 files changed, 5 insertions, 2 deletions
diff --git a/biology/bcftools/Makefile b/biology/bcftools/Makefile
index c9cac440562f..0ae73933e5d2 100644
--- a/biology/bcftools/Makefile
+++ b/biology/bcftools/Makefile
@@ -3,6 +3,7 @@
PORTNAME= bcftools
PORTVERSION= 1.9
+PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= cartwright@asu.edu
diff --git a/biology/gemma/Makefile b/biology/gemma/Makefile
index 72634c0e3506..ada67a32f052 100644
--- a/biology/gemma/Makefile
+++ b/biology/gemma/Makefile
@@ -2,7 +2,7 @@
PORTNAME= gemma
DISTVERSION= 0.98.1
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
@@ -26,6 +26,8 @@ LDFLAGS+= -lopenblas
OPTIONS_DEFINE= EXAMPLES
+BROKEN= Conflict between math/gsl and math/cblas constant redeclarations
+
pre-configure:
@${REINPLACE_CMD} -e 's|../bin/gemma|../gemma|' ${WRKSRC}/test/*.sh
diff --git a/biology/viennarna/Makefile b/biology/viennarna/Makefile
index e59497145a19..c0d295bb852c 100644
--- a/biology/viennarna/Makefile
+++ b/biology/viennarna/Makefile
@@ -2,7 +2,7 @@
PORTNAME= viennarna
DISTVERSION= 2.4.13
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= biology
MASTER_SITES= https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_4_x/
DISTNAME= ViennaRNA-${DISTVERSION}