diff options
| author | Jason W. Bacon <jwb@FreeBSD.org> | 2020-03-20 18:14:23 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2020-03-20 18:14:23 +0000 |
| commit | 06179918975ee71fd673847454dd26d69ef9ab76 (patch) | |
| tree | 07463ed206d5fe724e5e514afddfe8dfacfafcc4 /biology | |
| parent | d9d7867763819b262b79524ce5fcbb60034cdd09 (diff) | |
| download | ports-06179918975ee71fd673847454dd26d69ef9ab76.tar.gz ports-06179918975ee71fd673847454dd26d69ef9ab76.zip | |
biology/canu: Upgrade to 2.0
Several routine enhancements and bug fixes
Reported by: portscout
Notes
Notes:
svn path=/head/; revision=528792
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/canu/Makefile | 6 | ||||
| -rw-r--r-- | biology/canu/distinfo | 6 | ||||
| -rw-r--r-- | biology/canu/pkg-plist | 1 |
3 files changed, 4 insertions, 9 deletions
diff --git a/biology/canu/Makefile b/biology/canu/Makefile index 901cca55d59b..2014b7fd07ff 100644 --- a/biology/canu/Makefile +++ b/biology/canu/Makefile @@ -2,8 +2,7 @@ PORTNAME= canu DISTVERSIONPREFIX= v -DISTVERSION= 1.9 -PORTREVISION= 1 +DISTVERSION= 2.0 CATEGORIES= biology java perl5 MAINTAINER= jwb@FreeBSD.org @@ -42,9 +41,6 @@ pre-configure: -e 's|-fexpensive-optimizations||g' \ ${WRKSRC}/Makefile @${REINPLACE_CMD} \ - -e 's|\\$$bin/mhap-|${JAVAJARDIR}/mhap-|g' \ - ${WRKSRC}/pipelines/canu/OverlapMhap.pm - @${REINPLACE_CMD} \ -e 's|RealBin/lib|RealBin/../${SITE_PERL_REL}/canu|g' \ ${WRKSRC}/pipelines/canu.pl diff --git a/biology/canu/distinfo b/biology/canu/distinfo index fee05527429e..90ba522f9da3 100644 --- a/biology/canu/distinfo +++ b/biology/canu/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1573142752 -SHA256 (marbl-canu-v1.9_GH0.tar.gz) = 6b086ab6086c050752166500378bc4b3b3543d4c617863e894d296171cee3385 -SIZE (marbl-canu-v1.9_GH0.tar.gz) = 3410307 +TIMESTAMP = 1584624503 +SHA256 (marbl-canu-v2.0_GH0.tar.gz) = e2e6e8b5ec4dd4cfba5e372f4a64b2c01fbd544d4b5867746021f10771a6f4ef +SIZE (marbl-canu-v2.0_GH0.tar.gz) = 3443777 diff --git a/biology/canu/pkg-plist b/biology/canu/pkg-plist index 9cbcc2da4872..91f8c6ebaa28 100644 --- a/biology/canu/pkg-plist +++ b/biology/canu/pkg-plist @@ -41,7 +41,6 @@ bin/sequence bin/splitHaplotype bin/splitReads bin/sqStoreCreate -bin/sqStoreCreatePartition bin/sqStoreDumpFASTQ bin/sqStoreDumpMetaData bin/tgStoreCompress |