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authorMaho Nakata <maho@FreeBSD.org>2003-07-28 06:38:37 +0000
committerMaho Nakata <maho@FreeBSD.org>2003-07-28 06:38:37 +0000
commit4dd4b89f44b04b50c75511d2719b524dfffb1239 (patch)
treeb83901a56aec71c0ddf438dc7a3e10d1040319c7 /biology
parent7052fa782aedb367dd5c0d1bcabfafd330a42899 (diff)
downloadports-4dd4b89f44b04b50c75511d2719b524dfffb1239.tar.gz
ports-4dd4b89f44b04b50c75511d2719b524dfffb1239.zip
Notes
Diffstat (limited to 'biology')
-rw-r--r--biology/Makefile1
-rw-r--r--biology/garlic/Makefile59
-rw-r--r--biology/garlic/distinfo2
-rw-r--r--biology/garlic/files/patch-Makefile20
-rw-r--r--biology/garlic/pkg-descr12
-rw-r--r--biology/garlic/pkg-plist305
6 files changed, 399 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile
index 8f6463f959df..90d97ee596de 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -20,6 +20,7 @@
SUBDIR += fastdnaml
SUBDIR += flip
SUBDIR += fluctuate
+ SUBDIR += garlic
SUBDIR += genpak
SUBDIR += gff2ps
SUBDIR += gperiodic
diff --git a/biology/garlic/Makefile b/biology/garlic/Makefile
new file mode 100644
index 000000000000..91a99b83bd43
--- /dev/null
+++ b/biology/garlic/Makefile
@@ -0,0 +1,59 @@
+# New ports collection makefile for: garlic
+# Date created: 28 July 2003
+# Whom: maho@FreeBSD.org
+#
+# $FreeBSD$
+#
+
+PORTNAME= garlic
+PORTVERSION= 1.4
+CATEGORIES= biology
+MASTER_SITES= http://garlic.mefos.hr/sources/garlic-${PORTVERSION}/
+DISTFILES= ${DISTNAME}${EXTRACT_SUFX}
+.if !defined(NOPORTDOCS)
+DISTFILES+= ${DISTNAME}-doc${EXTRACT_SUFX}
+.endif
+EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX}
+
+MAINTAINER= maho@FreeBSD.org
+COMMENT= Molecular viewer, editor and visualization program
+
+USE_REINPLACE= yes
+USE_GMAKE= yes
+ALL_TARGET= # empty
+
+.if defined(WITH_OPTIMIZED_FLAGS)
+CFLAGS+= -O3 -ffast-math -finline-functions -fomit-frame-pointer -funroll-loops -fexpensive-optimizations -malign-double
+.if (${MACHINE_ARCH} == "i386")
+CFLAGS+= -mcpu=i686 -march=i686 -mfancy-math-387
+.endif # i386
+.endif
+
+post-patch:
+ @${REINPLACE_CMD} -e 's|%%X11BASE%%|${X11BASE}|g ; \
+ s|%%LOCALBASE%%|${LOCALBASE}|g ;\
+ s|%%CC%%|${CC}|g ; \
+ s|%%CFLAGS%%|${CFLAGS}|g' ${WRKSRC}/Makefile
+.if !defined(WITH_OPTIMIZED_FLAGS)
+ @${ECHO} "You can optimize by setting WITH_OPTIMIZED_FLAGS=yes."
+.endif
+
+do-install:
+ ${MKDIR} ${DATADIR}
+ ${INSTALL_PROGRAM} ${WRKSRC}/garlic ${PREFIX}/bin
+ ${INSTALL_DATA} ${WRKSRC}/.garlicrc ${DATADIR}
+ ${INSTALL_DATA} ${WRKSRC}/residues.pdb ${DATADIR}
+.if !defined(NOPORTDOCS)
+ @${MKDIR} ${EXAMPLESDIR}
+ @${INSTALL_DATA} ${WRKSRC}/*.pdb ${EXAMPLESDIR}
+ @${INSTALL_DATA} ${WRKSRC}/*.script ${EXAMPLESDIR}
+ @${MKDIR} ${DOCSDIR}
+ @${MKDIR} ${WRKDIR}/doc
+ @cd ${WRKDIR}/doc ; ${TAR} xvfz ${DISTDIR}/${DISTNAME}-doc${EXTRACT_SUFX}
+ @${TAR} -C ${WRKDIR}/doc/${DISTNAME} -cf - . | \
+ ${TAR} -C ${DOCSDIR} -xf -
+ @${FIND} ${DOCSDIR} | ${XARGS} ${CHOWN} ${SHAREOWN}:${SHAREGRP}
+ @${FIND} ${DOCSDIR} -type f | ${XARGS} ${CHMOD} ${SHAREMODE}
+.endif
+
+.include <bsd.port.mk>
diff --git a/biology/garlic/distinfo b/biology/garlic/distinfo
new file mode 100644
index 000000000000..515690f4f9ed
--- /dev/null
+++ b/biology/garlic/distinfo
@@ -0,0 +1,2 @@
+MD5 (garlic-1.4.tar.gz) = 2cff4654d09e2049e21328f0b93fe9c2
+MD5 (garlic-1.4-doc.tar.gz) = cb418171d211cec9fc857b3e5d63803c
diff --git a/biology/garlic/files/patch-Makefile b/biology/garlic/files/patch-Makefile
new file mode 100644
index 000000000000..18a9d63d72af
--- /dev/null
+++ b/biology/garlic/files/patch-Makefile
@@ -0,0 +1,20 @@
+--- Makefile.orig Fri May 30 20:27:25 2003
++++ Makefile Mon Jul 28 12:01:48 2003
+@@ -1,14 +1,14 @@
+-CC = gcc
++CC = %%CC%%
+
+ #CCOPT = -O
+ #CCOPT = -O3
+ #CCOPT = -O3 -g3
+ #CCOPT = -ansi -pedantic -g3
+-CCOPT = -ansi -pedantic -O -Wall -Wstrict-prototypes -g3
++CCOPT = %%CFLAGS%% -I%%LOCALBASE%%/include -I%%X11BASE%%/include
+
+ HEADERS = defines.h typedefs.h
+
+-LIBPATH = -L/usr/X11R6/lib
++LIBPATH = -L%%X11BASE%%/lib
+
+ LINKOPT = -lX11 -lm
+
diff --git a/biology/garlic/pkg-descr b/biology/garlic/pkg-descr
new file mode 100644
index 000000000000..7b1a95ff6153
--- /dev/null
+++ b/biology/garlic/pkg-descr
@@ -0,0 +1,12 @@
+Free, open source molecular viewer and editor for
+protein structure, DNA structure, PDB, molecular rendering,
+biological macromolecule.
+Atoms may be drawn as spheres of different sizes.
+Bonds may be drawn as cylindrical sticks, conical sticks or as curved surfaces.
+Five types of slab are available: planar, spherical,
+semi-spherical, cylindrical and semi-cylindrical.
+The slab position and thickness are visible in a small window.
+Atomic bonds as well as atoms are treated as independent drawable objects.
+and more!
+
+WWW: http://ccp14.semo.edu/ccp/web-mirrors/garlic/garlic/
diff --git a/biology/garlic/pkg-plist b/biology/garlic/pkg-plist
new file mode 100644
index 000000000000..6bb84f75df6b
--- /dev/null
+++ b/biology/garlic/pkg-plist
@@ -0,0 +1,305 @@
+bin/garlic
+share/garlic/.garlicrc
+share/garlic/residues.pdb
+@dirrm share/garlic
+%%PORTDOCS%%share/doc/garlic/data/favicon.ico
+%%PORTDOCS%%share/doc/garlic/data/index.html
+%%PORTDOCS%%share/doc/garlic/data/garlic.gif
+%%PORTDOCS%%share/doc/garlic/favicon.ico
+%%PORTDOCS%%share/doc/garlic/refcard/favicon.ico
+%%PORTDOCS%%share/doc/garlic/refcard/index.html
+%%PORTDOCS%%share/doc/garlic/refcard/garlic.gif
+%%PORTDOCS%%share/doc/garlic/refcard/refcard.html
+%%PORTDOCS%%share/doc/garlic/techinfo/favicon.ico
+%%PORTDOCS%%share/doc/garlic/techinfo/index.html
+%%PORTDOCS%%share/doc/garlic/techinfo/garlic.gif
+%%PORTDOCS%%share/doc/garlic/mouse/favicon.ico
+%%PORTDOCS%%share/doc/garlic/mouse/neighbor.gif
+%%PORTDOCS%%share/doc/garlic/mouse/outplot.gif
+%%PORTDOCS%%share/doc/garlic/mouse/index.html
+%%PORTDOCS%%share/doc/garlic/mouse/.xvpics/outplot.gif
+%%PORTDOCS%%share/doc/garlic/mouse/.xvpics/outstr.gif
+%%PORTDOCS%%share/doc/garlic/mouse/.xvpics/outcomp.gif
+%%PORTDOCS%%share/doc/garlic/mouse/.xvpics/outrama.gif
+%%PORTDOCS%%share/doc/garlic/mouse/outstr.gif
+%%PORTDOCS%%share/doc/garlic/mouse/outcomp.gif
+%%PORTDOCS%%share/doc/garlic/mouse/outrama.gif
+%%PORTDOCS%%share/doc/garlic/mouse/garlic.gif
+%%PORTDOCS%%share/doc/garlic/README
+%%PORTDOCS%%share/doc/garlic/download/favicon.ico
+%%PORTDOCS%%share/doc/garlic/download/index.html
+%%PORTDOCS%%share/doc/garlic/download/garlic.gif
+%%PORTDOCS%%share/doc/garlic/scripts/favicon.ico
+%%PORTDOCS%%share/doc/garlic/scripts/colors.script
+%%PORTDOCS%%share/doc/garlic/scripts/atoms.script
+%%PORTDOCS%%share/doc/garlic/scripts/probes.script
+%%PORTDOCS%%share/doc/garlic/scripts/bonds.script
+%%PORTDOCS%%share/doc/garlic/scripts/garlic.gif
+%%PORTDOCS%%share/doc/garlic/license/favicon.ico
+%%PORTDOCS%%share/doc/garlic/license/index.html
+%%PORTDOCS%%share/doc/garlic/license/garlic.gif
+%%PORTDOCS%%share/doc/garlic/docs.html
+%%PORTDOCS%%share/doc/garlic/index.html
+%%PORTDOCS%%share/doc/garlic/bold_statement.html
+%%PORTDOCS%%share/doc/garlic/gallery/favicon.ico
+%%PORTDOCS%%share/doc/garlic/gallery/index.html
+%%PORTDOCS%%share/doc/garlic/gallery/small1.png
+%%PORTDOCS%%share/doc/garlic/gallery/small2.png
+%%PORTDOCS%%share/doc/garlic/gallery/small3.png
+%%PORTDOCS%%share/doc/garlic/gallery/small4.png
+%%PORTDOCS%%share/doc/garlic/gallery/small5.png
+%%PORTDOCS%%share/doc/garlic/gallery/small6.png
+%%PORTDOCS%%share/doc/garlic/gallery/small7.png
+%%PORTDOCS%%share/doc/garlic/gallery/small8.png
+%%PORTDOCS%%share/doc/garlic/gallery/small9.png
+%%PORTDOCS%%share/doc/garlic/gallery/small10.png
+%%PORTDOCS%%share/doc/garlic/gallery/small11.png
+%%PORTDOCS%%share/doc/garlic/gallery/small12.png
+%%PORTDOCS%%share/doc/garlic/gallery/garlic.gif
+%%PORTDOCS%%share/doc/garlic/config/favicon.ico
+%%PORTDOCS%%share/doc/garlic/config/.garlicrc
+%%PORTDOCS%%share/doc/garlic/config/index.html
+%%PORTDOCS%%share/doc/garlic/config/garlic.gif
+%%PORTDOCS%%share/doc/garlic/support/favicon.ico
+%%PORTDOCS%%share/doc/garlic/support/index.html
+%%PORTDOCS%%share/doc/garlic/support/garlic.gif
+%%PORTDOCS%%share/doc/garlic/commands/fad.html
+%%PORTDOCS%%share/doc/garlic/commands/rep.html
+%%PORTDOCS%%share/doc/garlic/commands/favicon.ico
+%%PORTDOCS%%share/doc/garlic/commands/sho.html
+%%PORTDOCS%%share/doc/garlic/commands/aacodes.gif
+%%PORTDOCS%%share/doc/garlic/commands/pro_hint.gif
+%%PORTDOCS%%share/doc/garlic/commands/res.html
+%%PORTDOCS%%share/doc/garlic/commands/balls_and_sticks.gif
+%%PORTDOCS%%share/doc/garlic/commands/neighbor.gif
+%%PORTDOCS%%share/doc/garlic/commands/ref_off.gif
+%%PORTDOCS%%share/doc/garlic/commands/eis_oct.gif
+%%PORTDOCS%%share/doc/garlic/commands/sav.html
+%%PORTDOCS%%share/doc/garlic/commands/sca.html
+%%PORTDOCS%%share/doc/garlic/commands/plot1.gif
+%%PORTDOCS%%share/doc/garlic/commands/plot2.gif
+%%PORTDOCS%%share/doc/garlic/commands/plot3.gif
+%%PORTDOCS%%share/doc/garlic/commands/wheel.gif
+%%PORTDOCS%%share/doc/garlic/commands/dock1.jpg
+%%PORTDOCS%%share/doc/garlic/commands/dock2.jpg
+%%PORTDOCS%%share/doc/garlic/commands/fon.html
+%%PORTDOCS%%share/doc/garlic/commands/dis.html
+%%PORTDOCS%%share/doc/garlic/commands/seahorse.gif
+%%PORTDOCS%%share/doc/garlic/commands/dihedrals.html
+%%PORTDOCS%%share/doc/garlic/commands/gro.html
+%%PORTDOCS%%share/doc/garlic/commands/tfg.html
+%%PORTDOCS%%share/doc/garlic/commands/small_probe.gif
+%%PORTDOCS%%share/doc/garlic/commands/rad.html
+%%PORTDOCS%%share/doc/garlic/commands/plane1.jpg
+%%PORTDOCS%%share/doc/garlic/commands/plane2.jpg
+%%PORTDOCS%%share/doc/garlic/commands/plane3.jpg
+%%PORTDOCS%%share/doc/garlic/commands/whe.html
+%%PORTDOCS%%share/doc/garlic/commands/pat.html
+%%PORTDOCS%%share/doc/garlic/commands/pau.html
+%%PORTDOCS%%share/doc/garlic/commands/pos.html
+%%PORTDOCS%%share/doc/garlic/commands/kd_oct.gif
+%%PORTDOCS%%share/doc/garlic/commands/generic_hint.gif
+%%PORTDOCS%%share/doc/garlic/commands/index.html
+%%PORTDOCS%%share/doc/garlic/commands/phipsi.gif
+%%PORTDOCS%%share/doc/garlic/commands/mon.html
+%%PORTDOCS%%share/doc/garlic/commands/col.html
+%%PORTDOCS%%share/doc/garlic/commands/hid.html
+%%PORTDOCS%%share/doc/garlic/commands/com.html
+%%PORTDOCS%%share/doc/garlic/commands/ven.html
+%%PORTDOCS%%share/doc/garlic/commands/atoms.gif
+%%PORTDOCS%%share/doc/garlic/commands/ram.html
+%%PORTDOCS%%share/doc/garlic/commands/chi_angles.gif
+%%PORTDOCS%%share/doc/garlic/commands/str.gif
+%%PORTDOCS%%share/doc/garlic/commands/sla.html
+%%PORTDOCS%%share/doc/garlic/commands/cat.html
+%%PORTDOCS%%share/doc/garlic/commands/nei.html
+%%PORTDOCS%%share/doc/garlic/commands/blu.html
+%%PORTDOCS%%share/doc/garlic/commands/venn.gif
+%%PORTDOCS%%share/doc/garlic/commands/add.html
+%%PORTDOCS%%share/doc/garlic/commands/mov.html
+%%PORTDOCS%%share/doc/garlic/commands/residues.html
+%%PORTDOCS%%share/doc/garlic/commands/ssb.html
+%%PORTDOCS%%share/doc/garlic/commands/probes.gif
+%%PORTDOCS%%share/doc/garlic/commands/id.gif
+%%PORTDOCS%%share/doc/garlic/commands/ramacont.gif
+%%PORTDOCS%%share/doc/garlic/commands/tag.html
+%%PORTDOCS%%share/doc/garlic/commands/insert
+%%PORTDOCS%%share/doc/garlic/commands/stefin1.jpg
+%%PORTDOCS%%share/doc/garlic/commands/stefin2.jpg
+%%PORTDOCS%%share/doc/garlic/commands/rot.html
+%%PORTDOCS%%share/doc/garlic/commands/omega_hint.gif
+%%PORTDOCS%%share/doc/garlic/commands/win.html
+%%PORTDOCS%%share/doc/garlic/commands/sel.html
+%%PORTDOCS%%share/doc/garlic/commands/lab.html
+%%PORTDOCS%%share/doc/garlic/commands/dummy_atoms.html
+%%PORTDOCS%%share/doc/garlic/commands/loa.html
+%%PORTDOCS%%share/doc/garlic/commands/substmat.gif
+%%PORTDOCS%%share/doc/garlic/commands/bonds.gif
+%%PORTDOCS%%share/doc/garlic/commands/bg.html
+%%PORTDOCS%%share/doc/garlic/commands/bac.html
+%%PORTDOCS%%share/doc/garlic/commands/seq.html
+%%PORTDOCS%%share/doc/garlic/commands/patterns.gif
+%%PORTDOCS%%share/doc/garlic/commands/pla.html
+%%PORTDOCS%%share/doc/garlic/commands/colors.png
+%%PORTDOCS%%share/doc/garlic/commands/ste.html
+%%PORTDOCS%%share/doc/garlic/commands/tbg.html
+%%PORTDOCS%%share/doc/garlic/commands/log.html
+%%PORTDOCS%%share/doc/garlic/commands/set.html
+%%PORTDOCS%%share/doc/garlic/commands/hyb.html
+%%PORTDOCS%%share/doc/garlic/commands/legend.gif
+%%PORTDOCS%%share/doc/garlic/commands/pro.html
+%%PORTDOCS%%share/doc/garlic/commands/sti.html
+%%PORTDOCS%%share/doc/garlic/commands/cre.html
+%%PORTDOCS%%share/doc/garlic/commands/bal.html
+%%PORTDOCS%%share/doc/garlic/commands/squid.gif
+%%PORTDOCS%%share/doc/garlic/commands/exe.html
+%%PORTDOCS%%share/doc/garlic/commands/bon.html
+%%PORTDOCS%%share/doc/garlic/commands/garlic.gif
+%%PORTDOCS%%share/doc/garlic/commands/plot_eq1.gif
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+%%PORTDOCS%%share/doc/garlic/commands/ign.html
+%%PORTDOCS%%share/doc/garlic/commands/plo.html
+%%PORTDOCS%%share/doc/garlic/commands/str.html
+%%PORTDOCS%%share/doc/garlic/commands/exi.html
+%%PORTDOCS%%share/doc/garlic/commands/doc.html
+%%PORTDOCS%%share/doc/garlic/commands/tit.html
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+%%PORTDOCS%%share/doc/garlic/commands/papain1.jpg
+%%PORTDOCS%%share/doc/garlic/commands/papain2.jpg
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+%%PORTDOCS%%share/doc/garlic/commands/ref.html
+%%PORTDOCS%%share/doc/garlic/commands/mem.html
+%%PORTDOCS%%share/doc/garlic/commands/reg.html
+%%PORTDOCS%%share/doc/garlic/commands/prepro_hint.gif
+%%PORTDOCS%%share/doc/garlic/commands/tra.html
+%%PORTDOCS%%share/doc/garlic/commands/edi.html
+%%PORTDOCS%%share/doc/garlic/commands/cen.html
+%%PORTDOCS%%share/doc/garlic/commands/ato.html
+%%PORTDOCS%%share/doc/garlic/commands/ramaplot.gif
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+%%PORTDOCS%%share/doc/garlic/controls/pc.gif
+%%PORTDOCS%%share/doc/garlic/controls/garlic.gif
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+%%PORTDOCS%%share/doc/garlic/cookbook/index.html
+%%PORTDOCS%%share/doc/garlic/cookbook/garlic_recipe1.html
+%%PORTDOCS%%share/doc/garlic/cookbook/garlic.gif
+%%PORTDOCS%%share/doc/garlic/future-docs.html
+%%PORTDOCS%%share/doc/garlic/features/favicon.ico
+%%PORTDOCS%%share/doc/garlic/features/index.html
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+%%PORTDOCS%%share/doc/garlic/bugfixes/favicon.ico
+%%PORTDOCS%%share/doc/garlic/bugfixes/index.html
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+%%PORTDOCS%%share/doc/garlic/tutorial/lesson12.html
+%%PORTDOCS%%share/doc/garlic/tutorial/index.html
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+%%PORTDOCS%%share/doc/garlic/tutorial/lesson2.html
+%%PORTDOCS%%share/doc/garlic/tutorial/lesson3.html
+%%PORTDOCS%%share/doc/garlic/tutorial/lesson4.html
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+%%PORTDOCS%%share/doc/garlic/tutorial/script3.html
+%%PORTDOCS%%share/doc/garlic/tutorial/script4.html
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+%%PORTDOCS%%share/doc/garlic/garlic.gif
+%%PORTDOCS%%share/doc/garlic/install/favicon.ico
+%%PORTDOCS%%share/doc/garlic/install/macosx.html
+%%PORTDOCS%%share/doc/garlic/install/index.html
+%%PORTDOCS%%share/doc/garlic/install/octane.html
+%%PORTDOCS%%share/doc/garlic/install/mol_path.html
+%%PORTDOCS%%share/doc/garlic/install/garlic.gif
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+%%PORTDOCS%%share/doc/garlic/changes/favicon.ico
+%%PORTDOCS%%share/doc/garlic/changes/index.html
+%%PORTDOCS%%share/doc/garlic/changes/garlic.gif
+%%PORTDOCS%%@dirrm share/doc/garlic/whatis
+%%PORTDOCS%%@dirrm share/doc/garlic/tutorial
+%%PORTDOCS%%@dirrm share/doc/garlic/techinfo
+%%PORTDOCS%%@dirrm share/doc/garlic/support
+%%PORTDOCS%%@dirrm share/doc/garlic/scripts
+%%PORTDOCS%%@dirrm share/doc/garlic/refcard
+%%PORTDOCS%%@dirrm share/doc/garlic/options
+%%PORTDOCS%%@dirrm share/doc/garlic/mouse/.xvpics
+%%PORTDOCS%%@dirrm share/doc/garlic/mouse
+%%PORTDOCS%%@dirrm share/doc/garlic/license
+%%PORTDOCS%%@dirrm share/doc/garlic/install
+%%PORTDOCS%%@dirrm share/doc/garlic/gallery
+%%PORTDOCS%%@dirrm share/doc/garlic/features
+%%PORTDOCS%%@dirrm share/doc/garlic/download
+%%PORTDOCS%%@dirrm share/doc/garlic/data
+%%PORTDOCS%%@dirrm share/doc/garlic/cookbook
+%%PORTDOCS%%@dirrm share/doc/garlic/controls
+%%PORTDOCS%%@dirrm share/doc/garlic/config
+%%PORTDOCS%%@dirrm share/doc/garlic/competition
+%%PORTDOCS%%@dirrm share/doc/garlic/commands
+%%PORTDOCS%%@dirrm share/doc/garlic/changes
+%%PORTDOCS%%@dirrm share/doc/garlic/bugfixes
+%%PORTDOCS%%@dirrm share/doc/garlic
+%%PORTDOCS%%%%EXAMPLESDIR%%/1mal.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/2fcp.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/2omf.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/2por.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/adrenalin.pdb
+%%PORTDOCS%%%%EXAMPLESDIR%%/arrow.pdb
+%%PORTDOCS%%%%EXAMPLESDIR%%/atoms.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/bonds.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/borneol.pdb
+%%PORTDOCS%%%%EXAMPLESDIR%%/box.pdb
+%%PORTDOCS%%%%EXAMPLESDIR%%/colors.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/dance.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/gallery.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/geo.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/hyb.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/many-proteins.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/patterns.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/patterns2.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/patterns3.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/phe.pdb
+%%PORTDOCS%%%%EXAMPLESDIR%%/porins.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/porins2.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/porins3.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/porins4.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/probes.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/rainbow.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/residues.pdb
+%%PORTDOCS%%%%EXAMPLESDIR%%/sample.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/singleatom.pdb
+%%PORTDOCS%%%%EXAMPLESDIR%%/singlebond.pdb
+%%PORTDOCS%%%%EXAMPLESDIR%%/test.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/trp.pdb
+%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%