diff options
| author | Dmitry Marakasov <amdmi3@FreeBSD.org> | 2011-09-23 22:26:39 +0000 |
|---|---|---|
| committer | Dmitry Marakasov <amdmi3@FreeBSD.org> | 2011-09-23 22:26:39 +0000 |
| commit | 6f6fbe4bdf9851de1eb6ebef5287e3007846045e (patch) | |
| tree | 3b556699991305af672fba96e0e8b6bb88bcc7da /biology | |
| parent | 86f8cde1da39aadc3efbc11e60998d886c86c36e (diff) | |
| download | ports-6f6fbe4bdf9851de1eb6ebef5287e3007846045e.tar.gz ports-6f6fbe4bdf9851de1eb6ebef5287e3007846045e.zip | |
Notes
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/crux/Makefile | 1 | ||||
| -rw-r--r-- | biology/embassy/Makefile | 6 | ||||
| -rw-r--r-- | biology/mopac/Makefile | 5 | ||||
| -rw-r--r-- | biology/protomol/Makefile | 2 | ||||
| -rw-r--r-- | biology/xdrawchem/Makefile | 4 |
5 files changed, 8 insertions, 10 deletions
diff --git a/biology/crux/Makefile b/biology/crux/Makefile index f483a50b21ef..3a464a488e6f 100644 --- a/biology/crux/Makefile +++ b/biology/crux/Makefile @@ -27,7 +27,6 @@ OPTIONS= SYS_LINALG "Enable system ATLAS/LAPACK" Off CPPFLAGS+= -I${LOCALBASE}/include LDFLAGS+= -L${LOCALBASE}/lib -CONFIGURE_ENV+= CPPFLAGS="${CPPFLAGS}" LDFLAGS="${LDFLAGS}" USE_FORTRAN= yes .if defined(WITH_SYS_LINALG) CONFIGURE_ARGS+= --enable-sys-linalg diff --git a/biology/embassy/Makefile b/biology/embassy/Makefile index 09156c4a5bd6..41d1b14baf4b 100644 --- a/biology/embassy/Makefile +++ b/biology/embassy/Makefile @@ -46,8 +46,10 @@ OPTIONS= DOMAINATRIX "Protein domain apps" on \ IPRSCAN "InterPro scan" on \ CBSTOOLS "CBS Tools" on -CONFIGURE_ENV+= CPPFLAGS="-I${PREFIX}/include -I${LOCALBASE}/include -I${LOCALBASE}/emboss/include" \ - LDFLAGS="-L${PREFIX}/lib -L${LOCALBASE}/lib -L${LOCALBASE}/emboss/lib" +CPPFLAGS+= -I${PREFIX}/include -I${LOCALBASE}/include -I${LOCALBASE}/emboss/include +LDFLAGS+= -L${PREFIX}/lib -L${LOCALBASE}/lib -L${LOCALBASE}/emboss/lib + +CONFIGURE_ENV= CPPFLAGS="${CPPFLAGS}" LDFLAGS="${LDFLAGS}" EMBASSY_WRKDIR= ${WRKSRC}/EMBASSY DOMAINATRIX_VERSION= 0.1.0 diff --git a/biology/mopac/Makefile b/biology/mopac/Makefile index b51e1710f55c..20eb7487a319 100644 --- a/biology/mopac/Makefile +++ b/biology/mopac/Makefile @@ -22,12 +22,11 @@ USE_GMAKE= yes USE_AUTOTOOLS= aclocal automake autoconf libtool ACLOCAL_ARGS= -I ${LOCALBASE}/share/aclocal AUTOMAKE_ARGS= --add-missing --copy -CONFIGURE_ENV= CPPFLAGS="${CPPFLAGS}" LDFLAGS="${LDFLAGS}" MAKE_JOBS_SAFE= yes USE_LDCONFIG= yes -CPPFLAGS= -I${LOCALBASE}/include -LDFLAGS= -L${LOCALBASE}/lib +CPPFLAGS+= -I${LOCALBASE}/include +LDFLAGS+= -L${LOCALBASE}/lib MOPAC_SUBVERSION= 1.11 diff --git a/biology/protomol/Makefile b/biology/protomol/Makefile index 102dd98a43e8..3fc6b7680a23 100644 --- a/biology/protomol/Makefile +++ b/biology/protomol/Makefile @@ -27,8 +27,6 @@ CONFIGURE_ARGS+= --without-irix_mipspro_mpi CPPFLAGS+= -I${LOCALBASE}/include CXXFLAGS+= -L${LOCALBASE}/lib -CONFIGURE_ENV+= CPPFLAGS="${CPPFLAGS}" CXXFLAGS="${CXXFLAGS}" - WRKSRC= ${WRKDIR}/${PORTNAME} OPTIONS= GLUT "Use glut" on diff --git a/biology/xdrawchem/Makefile b/biology/xdrawchem/Makefile index e95f483367cb..7743131b468e 100644 --- a/biology/xdrawchem/Makefile +++ b/biology/xdrawchem/Makefile @@ -21,8 +21,8 @@ USE_GMAKE= yes USE_QT_VER= 3 CONFIGURE_ENV= QTINCDIR="${LOCALBASE}/include" \ - QTLIBDIR="${LOCALBASE}/lib" \ - LDFLAGS="${LDFLAGS} -lm" + QTLIBDIR="${LOCALBASE}/lib" +LDFLAGS+= -lm MAKE_ARGS+= LDFLAGS+="-lqt-mt ${PTHREAD_LIBS}" |