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authorPete Fritchman <petef@FreeBSD.org>2001-12-19 10:03:26 +0000
committerPete Fritchman <petef@FreeBSD.org>2001-12-19 10:03:26 +0000
commit74375be19fb7421b8c54d7d69d9fc18ece7ab61e (patch)
treec74f08b05ea2946a803a3b1e1944f6ec21ea33be /biology
parent556fa284449a34da4f68222f561efccf2160907e (diff)
downloadports-74375be19fb7421b8c54d7d69d9fc18ece7ab61e.tar.gz
ports-74375be19fb7421b8c54d7d69d9fc18ece7ab61e.zip
Notes
Diffstat (limited to 'biology')
-rw-r--r--biology/Makefile1
-rw-r--r--biology/gff2ps/Makefile32
-rw-r--r--biology/gff2ps/distinfo1
-rw-r--r--biology/gff2ps/pkg-comment1
-rw-r--r--biology/gff2ps/pkg-descr6
-rw-r--r--biology/gff2ps/pkg-plist1
6 files changed, 42 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile
index 982d82bce3dd..d07fc1553357 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -15,6 +15,7 @@
SUBDIR += fluctuate
SUBDIR += gaussian98
SUBDIR += genpak
+ SUBDIR += gff2ps
SUBDIR += gperiodic
SUBDIR += grappa
SUBDIR += hmmer
diff --git a/biology/gff2ps/Makefile b/biology/gff2ps/Makefile
new file mode 100644
index 000000000000..01875134bffc
--- /dev/null
+++ b/biology/gff2ps/Makefile
@@ -0,0 +1,32 @@
+# New ports collection makefile for: gff2ps
+# Date created: 17 December 2001
+# Whom: Camson Huynh <chuynh@biolateral.com.au>
+#
+# $FreeBSD$
+#
+
+PORTNAME= gff2ps
+PORTVERSION= 0.97b
+CATEGORIES= biology
+MASTER_SITES= ftp://www1.imim.es/pub/gff_tools/gff2ps/
+DISTNAME= gff2ps_v${PORTVERSION}
+EXTRACT_SUFX= .gz
+
+MAINTAINER= chuynh@biolateral.com.au
+
+RUN_DEPENDS= gawk:${PORTSDIR}/lang/gawk \
+ bash:${PORTSDIR}/shells/bash2
+
+PATCH_WRKSRC= ${WRKDIR}
+EXTRACT_AFTER_ARGS= > ${WRKDIR}/gff2ps
+
+NO_BUILD= yes
+
+post-patch:
+ @${PERL} -pi -e 's,^#!/bin/bash,#!${LOCALBASE}/bin/bash,; \
+ s,/usr/local/bin/gawk,${LOCALBASE}/bin/gawk,' ${WRKDIR}/gff2ps
+
+do-install:
+ ${INSTALL_SCRIPT} ${WRKDIR}/gff2ps ${PREFIX}/bin
+
+.include <bsd.port.mk>
diff --git a/biology/gff2ps/distinfo b/biology/gff2ps/distinfo
new file mode 100644
index 000000000000..332bbf0971a8
--- /dev/null
+++ b/biology/gff2ps/distinfo
@@ -0,0 +1 @@
+MD5 (gff2ps_v0.97b.gz) = bc200821ff1a43d6ec7e43905520d902
diff --git a/biology/gff2ps/pkg-comment b/biology/gff2ps/pkg-comment
new file mode 100644
index 000000000000..6b164c3b4a56
--- /dev/null
+++ b/biology/gff2ps/pkg-comment
@@ -0,0 +1 @@
+Converts gff-formated genomic data-sets to PostScript
diff --git a/biology/gff2ps/pkg-descr b/biology/gff2ps/pkg-descr
new file mode 100644
index 000000000000..0561026915e5
--- /dev/null
+++ b/biology/gff2ps/pkg-descr
@@ -0,0 +1,6 @@
+gff2ps is a script program developed with the aim of converting gff-formatted
+records into high quality one-dimensional plots in PostScript. Such plots maybe
+useful for comparing genomic structures and to visualizing outputs from genome
+annotation programs.
+
+WWW: http://www1.imim.es/~jabril/
diff --git a/biology/gff2ps/pkg-plist b/biology/gff2ps/pkg-plist
new file mode 100644
index 000000000000..c1d1c0e168ce
--- /dev/null
+++ b/biology/gff2ps/pkg-plist
@@ -0,0 +1 @@
+bin/gff2ps