Bump to v0.16.

PR:		111719
Submitted by:	araujo@bsdmail.org

3 files changed, 53 insertions, 6 deletions

diff --git a/biology/p5-Bio-Phylo/Makefile b/biology/p5-Bio-Phylo/Makefile
index 3cd6454e72a8..6b9a142a1cf2 100644
--- a/biology/p5-Bio-Phylo/Makefile
+++ b/biology/p5-Bio-Phylo/Makefile
@@ -6,8 +6,7 @@
 #
 
 PORTNAME=	Bio-Phylo
-PORTVERSION=	0.15
-PORTREVISION=	1
+PORTVERSION=	0.16
 CATEGORIES=	biology perl5
 MASTER_SITES=	${MASTER_SITE_PERL_CPAN}
 MASTER_SITE_SUBDIR=	Bio
@@ -23,8 +22,14 @@ BUILD_DEPENDS=	p5-Exception-Class>1.22:${PORTSDIR}/devel/p5-Exception-Class \
 		p5-SVG>=1.07:${PORTSDIR}/textproc/p5-SVG
 RUN_DEPENDS=	${BUILD_DEPENDS}
 
-MAN1=	dndtag.pl.1
+MAN1=	dndtag.pl.1 \
+	droptip.pl.1 \
+	bremer.pl.1 \
+	age2bl.pl.1 \
+	dnd2svg.pl.1
 MAN3=	Bio::Phylo.3 \
+	Bio::ObjectCompat.3 \
+	Bio::Phylo::Adaptor.3 \
 	Bio::Phylo::ConfigData.3 \
 	Bio::Phylo::Forest.3 \
 	Bio::Phylo::Forest::Node.3 \
@@ -32,16 +37,33 @@ MAN3=	Bio::Phylo.3 \
 	Bio::Phylo::Generator.3 \
 	Bio::Phylo::IO.3 \
 	Bio::Phylo::Listable.3 \
+	Bio::Phylo::Adaptor::Bioperl::Datum.3 \
+	Bio::Phylo::Adaptor::Bioperl::Matrix.3 \
+	Bio::Phylo::Adaptor::Bioperl::Node.3 \
+	Bio::Phylo::Adaptor::Bioperl::Tree.3 \
 	Bio::Phylo::Manual.3 \
 	Bio::Phylo::Matrices.3 \
 	Bio::Phylo::Matrices::Datum.3 \
+	Bio::Phylo::Matrices::Datatype.3 \
 	Bio::Phylo::Matrices::Matrix.3 \
+	Bio::Phylo::Matrices::TypeSafeData.3 \
+	Bio::Phylo::Matrices::Datatype::Custom.3 \
+	Bio::Phylo::Matrices::Datatype::Dna.3 \
+	Bio::Phylo::Matrices::Datatype::Rna.3 \
+	Bio::Phylo::Matrices::Datatype::Restriction.3 \
+	Bio::Phylo::Matrices::Datatype::Protein.3 \
+	Bio::Phylo::Matrices::Datatype::Continuous.3 \
+	Bio::Phylo::Matrices::Datatype::Standard.3 \
+	Bio::Phylo::Matrices::Datatype::Mixed.3 \
+	Bio::Phylo::Mediators::TaxaMediator.3 \
 	Bio::Phylo::Parsers::Newick.3 \
 	Bio::Phylo::Parsers::Nexus.3 \
 	Bio::Phylo::Parsers::Table.3 \
 	Bio::Phylo::Parsers::Taxlist.3 \
 	Bio::Phylo::Taxa.3 \
+	Bio::Phylo::Taxa::TaxaLinker.3 \
 	Bio::Phylo::Taxa::Taxon.3 \
+	Bio::Phylo::Taxa::TaxonLinker.3 \
 	Bio::Phylo::Treedrawer.3 \
 	Bio::Phylo::Treedrawer::Svg.3 \
 	Bio::Phylo::Unparsers::Mrp.3 \
@@ -51,6 +73,7 @@ MAN3=	Bio::Phylo.3 \
 	Bio::Phylo::Util::CONSTANT.3 \
 	Bio::Phylo::Util::Exceptions.3 \
 	Bio::Phylo::Util::IDPool.3 \
+	Bio::Phylo::Util::XMLWritable.3
 
 PERL_MODBUILD=	yes
 
diff --git a/biology/p5-Bio-Phylo/distinfo b/biology/p5-Bio-Phylo/distinfo
index 93df909c161d..068eea7902e3 100644
--- a/biology/p5-Bio-Phylo/distinfo
+++ b/biology/p5-Bio-Phylo/distinfo
@@ -1,3 +1,3 @@
-MD5 (Bio-Phylo-0.15.tar.gz) = 73783c01218717e2c44016ad52ee73bb
-SHA256 (Bio-Phylo-0.15.tar.gz) = fcec20c17f1909df20d22f87f655e62fa5cf93c92fa64460f1937e77a39bc067
-SIZE (Bio-Phylo-0.15.tar.gz) = 104576
+MD5 (Bio-Phylo-0.16.tar.gz) = 78c6d2ceced9b013898e7aa7b61010c0
+SHA256 (Bio-Phylo-0.16.tar.gz) = 17317e23c7423b197e08984aead6e52c454e47badbdfa8447fa499175e2789cd
+SIZE (Bio-Phylo-0.16.tar.gz) = 129830
diff --git a/biology/p5-Bio-Phylo/pkg-plist b/biology/p5-Bio-Phylo/pkg-plist
index 9f79fab2a457..945716b52c14 100644
--- a/biology/p5-Bio-Phylo/pkg-plist
+++ b/biology/p5-Bio-Phylo/pkg-plist
@@ -6,6 +6,8 @@ bin/dndtag.pl
 bin/droptip.pl
 bin/postmb.pl
 %%SITE_PERL%%/Bio/Phylo.pm
+%%SITE_PERL%%/Bio/ObjectCompat.pod
+%%SITE_PERL%%/Bio/Phylo/Adaptor.pm
 %%SITE_PERL%%/Bio/Phylo/ConfigData.pm
 %%SITE_PERL%%/Bio/Phylo/Forest.pm
 %%SITE_PERL%%/Bio/Phylo/Forest/Node.pm
@@ -14,15 +16,32 @@ bin/postmb.pl
 %%SITE_PERL%%/Bio/Phylo/IO.pm
 %%SITE_PERL%%/Bio/Phylo/Listable.pm
 %%SITE_PERL%%/Bio/Phylo/Manual.pod
+%%SITE_PERL%%/Bio/Phylo/Adaptor/Bioperl/Node.pm
+%%SITE_PERL%%/Bio/Phylo/Adaptor/Bioperl/Datum.pm
+%%SITE_PERL%%/Bio/Phylo/Adaptor/Bioperl/Tree.pm
+%%SITE_PERL%%/Bio/Phylo/Adaptor/Bioperl/Matrix.pm
 %%SITE_PERL%%/Bio/Phylo/Matrices.pm
+%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype.pm
 %%SITE_PERL%%/Bio/Phylo/Matrices/Datum.pm
 %%SITE_PERL%%/Bio/Phylo/Matrices/Matrix.pm
+%%SITE_PERL%%/Bio/Phylo/Matrices/TypeSafeData.pm
+%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Protein.pm
+%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Standard.pm
+%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Restriction.pm
+%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Dna.pm
+%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Custom.pm
+%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Mixed.pm
+%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Continuous.pm
+%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Rna.pm
+%%SITE_PERL%%/Bio/Phylo/Mediators/TaxaMediator.pm
 %%SITE_PERL%%/Bio/Phylo/Parsers/Newick.pm
 %%SITE_PERL%%/Bio/Phylo/Parsers/Nexus.pm
 %%SITE_PERL%%/Bio/Phylo/Parsers/Table.pm
 %%SITE_PERL%%/Bio/Phylo/Parsers/Taxlist.pm
 %%SITE_PERL%%/Bio/Phylo/Taxa.pm
 %%SITE_PERL%%/Bio/Phylo/Taxa/Taxon.pm
+%%SITE_PERL%%/Bio/Phylo/Taxa/TaxaLinker.pm
+%%SITE_PERL%%/Bio/Phylo/Taxa/TaxonLinker.pm
 %%SITE_PERL%%/Bio/Phylo/Treedrawer.pm
 %%SITE_PERL%%/Bio/Phylo/Treedrawer/Svg.pm
 %%SITE_PERL%%/Bio/Phylo/Unparsers/Mrp.pm
@@ -32,12 +51,17 @@ bin/postmb.pl
 %%SITE_PERL%%/Bio/Phylo/Util/CONSTANT.pm
 %%SITE_PERL%%/Bio/Phylo/Util/Exceptions.pm
 %%SITE_PERL%%/Bio/Phylo/Util/IDPool.pm
+%%SITE_PERL%%/Bio/Phylo/Util/XMLWritable.pm
+@dirrm %%SITE_PERL%%/Bio/Phylo/Adaptor/Bioperl
+@dirrm %%SITE_PERL%%/Bio/Phylo/Adaptor
 @dirrm %%SITE_PERL%%/Bio/Phylo/Util
 @dirrm %%SITE_PERL%%/Bio/Phylo/Unparsers
 @dirrm %%SITE_PERL%%/Bio/Phylo/Treedrawer
 @dirrm %%SITE_PERL%%/Bio/Phylo/Taxa
 @dirrm %%SITE_PERL%%/Bio/Phylo/Parsers
+@dirrm %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype
 @dirrm %%SITE_PERL%%/Bio/Phylo/Matrices
+@dirrm %%SITE_PERL%%/Bio/Phylo/Mediators
 @dirrm %%SITE_PERL%%/Bio/Phylo/Forest
 @dirrm %%SITE_PERL%%/Bio/Phylo
 @dirrmtry %%SITE_PERL%%/Bio