Make it so that the default Perl is always called perl5.

- Move Perl's man1 files along with its man3 files.
- Move where Perl installs its modules man1 pages.
- Convert the ports installing man1 pages.
- Make different Perl versions installable at the same time.
  Though you should note that only the default version can be used to
  install Perl modules, and the non default Perl versions cannot use the
  modules installed via ports if they contain .so as they are installed
  in a version specific directory.

Reviewed by:	bapt (the Mk bits)
Exp-run by:	antoine
Sponsored by:	Absolight
Differential Revision:	https://reviews.freebsd.org/D3542

5 files changed, 72 insertions, 72 deletions

diff --git a/biology/p5-AcePerl/pkg-plist b/biology/p5-AcePerl/pkg-plist
index 8b3ea9e627b5..ac1cc6daecc5 100644
--- a/biology/p5-AcePerl/pkg-plist
+++ b/biology/p5-AcePerl/pkg-plist
@@ -142,4 +142,4 @@ bin/ace.pl
 %%PERL5_MAN3%%/Ace::Sequence::Homol.3.gz
 %%PERL5_MAN3%%/Ace::Sequence::Multi.3.gz
 %%PERL5_MAN3%%/Ace::Sequence::Transcript.3.gz
-man/man1/ace.pl.1.gz
+%%PERL5_MAN1%%/ace.pl.1.gz
diff --git a/biology/p5-Bio-GFF3/pkg-plist b/biology/p5-Bio-GFF3/pkg-plist
index 5aac13a355e5..584d93f3d2d1 100644
--- a/biology/p5-Bio-GFF3/pkg-plist
+++ b/biology/p5-Bio-GFF3/pkg-plist
@@ -9,4 +9,4 @@ bin/gff3_from_fasta
 %%PERL5_MAN3%%/Bio::GFF3::LowLevel::Parser::1_0_backcompat.3.gz
 %%PERL5_MAN3%%/Bio::GFF3::Transform::FromFasta.3.gz
 %%PERL5_MAN3%%/Bio::GFF3::Transform::SyncDirectives.3.gz
-man/man1/gff3_from_fasta.1.gz
+%%PERL5_MAN1%%/gff3_from_fasta.1.gz
diff --git a/biology/p5-Bio-Graphics/pkg-plist b/biology/p5-Bio-Graphics/pkg-plist
index c84139e3fef7..d3d3927956ca 100644
--- a/biology/p5-Bio-Graphics/pkg-plist
+++ b/biology/p5-Bio-Graphics/pkg-plist
@@ -212,7 +212,7 @@ bin/search_overview.pl
 %%PERL5_MAN3%%/Bio::Graphics::Util.3.gz
 %%PERL5_MAN3%%/Bio::Graphics::Wiggle.3.gz
 %%PERL5_MAN3%%/Bio::Graphics::Wiggle::Loader.3.gz
-man/man1/contig_draw.pl.1.gz
-man/man1/feature_draw.pl.1.gz
-man/man1/frend.pl.1.gz
-man/man1/search_overview.pl.1.gz
+%%PERL5_MAN1%%/contig_draw.pl.1.gz
+%%PERL5_MAN1%%/feature_draw.pl.1.gz
+%%PERL5_MAN1%%/frend.pl.1.gz
+%%PERL5_MAN1%%/search_overview.pl.1.gz
diff --git a/biology/p5-Bio-NEXUS/pkg-plist b/biology/p5-Bio-NEXUS/pkg-plist
index 933493e67e5a..4e59edb5e66d 100644
--- a/biology/p5-Bio-NEXUS/pkg-plist
+++ b/biology/p5-Bio-NEXUS/pkg-plist
@@ -57,6 +57,6 @@ bin/nextool.pl
 %%PERL5_MAN3%%/Bio::NEXUS::Util::Exceptions.3.gz
 %%PERL5_MAN3%%/Bio::NEXUS::Util::Logger.3.gz
 %%PERL5_MAN3%%/Bio::NEXUS::WeightSet.3.gz
-man/man1/nex2text_tree.pl.1.gz
-man/man1/nexplot.pl.1.gz
-man/man1/nextool.pl.1.gz
+%%PERL5_MAN1%%/nex2text_tree.pl.1.gz
+%%PERL5_MAN1%%/nexplot.pl.1.gz
+%%PERL5_MAN1%%/nextool.pl.1.gz
diff --git a/biology/p5-bioperl/pkg-plist b/biology/p5-bioperl/pkg-plist
index 74533a2e94ce..4f532432a681 100644
--- a/biology/p5-bioperl/pkg-plist
+++ b/biology/p5-bioperl/pkg-plist
@@ -1694,69 +1694,69 @@ bin/bp_unflatten_seq.pl
 %%PERL5_MAN3%%/Bio::Variation::SeqDiff.3.gz
 %%PERL5_MAN3%%/Bio::Variation::VariantI.3.gz
 %%PERL5_MAN3%%/Bio::WebAgent.3.gz
-man/man1/bp_aacomp.pl.1.gz
-man/man1/bp_biofetch_genbank_proxy.pl.1.gz
-man/man1/bp_bioflat_index.pl.1.gz
-man/man1/bp_biogetseq.pl.1.gz
-man/man1/bp_blast2tree.pl.1.gz
-man/man1/bp_bulk_load_gff.pl.1.gz
-man/man1/bp_chaos_plot.pl.1.gz
-man/man1/bp_classify_hits_kingdom.pl.1.gz
-man/man1/bp_composite_LD.pl.1.gz
-man/man1/bp_dbsplit.pl.1.gz
-man/man1/bp_download_query_genbank.pl.1.gz
-man/man1/bp_extract_feature_seq.pl.1.gz
-man/man1/bp_fast_load_gff.pl.1.gz
-man/man1/bp_fastam9_to_table.pl.1.gz
-man/man1/bp_fetch.pl.1.gz
-man/man1/bp_filter_search.pl.1.gz
-man/man1/bp_flanks.pl.1.gz
-man/man1/bp_gccalc.pl.1.gz
-man/man1/bp_genbank2gff.pl.1.gz
-man/man1/bp_genbank2gff3.pl.1.gz
-man/man1/bp_generate_histogram.pl.1.gz
-man/man1/bp_heterogeneity_test.pl.1.gz
-man/man1/bp_hivq.pl.1.gz
-man/man1/bp_hmmer_to_table.pl.1.gz
-man/man1/bp_index.pl.1.gz
-man/man1/bp_load_gff.pl.1.gz
-man/man1/bp_local_taxonomydb_query.pl.1.gz
-man/man1/bp_make_mrna_protein.pl.1.gz
-man/man1/bp_mask_by_search.pl.1.gz
-man/man1/bp_meta_gff.pl.1.gz
-man/man1/bp_mrtrans.pl.1.gz
-man/man1/bp_mutate.pl.1.gz
-man/man1/bp_netinstall.pl.1.gz
-man/man1/bp_nexus2nh.pl.1.gz
-man/man1/bp_nrdb.pl.1.gz
-man/man1/bp_oligo_count.pl.1.gz
-man/man1/bp_pairwise_kaks.pl.1.gz
-man/man1/bp_parse_hmmsearch.pl.1.gz
-man/man1/bp_process_gadfly.pl.1.gz
-man/man1/bp_process_sgd.pl.1.gz
-man/man1/bp_process_wormbase.pl.1.gz
-man/man1/bp_query_entrez_taxa.pl.1.gz
-man/man1/bp_remote_blast.pl.1.gz
-man/man1/bp_revtrans-motif.pl.1.gz
-man/man1/bp_search2BSML.pl.1.gz
-man/man1/bp_search2alnblocks.pl.1.gz
-man/man1/bp_search2gff.pl.1.gz
-man/man1/bp_search2table.pl.1.gz
-man/man1/bp_search2tribe.pl.1.gz
-man/man1/bp_seq_length.pl.1.gz
-man/man1/bp_seqconvert.pl.1.gz
-man/man1/bp_seqcut.pl.1.gz
-man/man1/bp_seqfeature_load.pl.1.gz
-man/man1/bp_seqpart.pl.1.gz
-man/man1/bp_seqret.pl.1.gz
-man/man1/bp_seqretsplit.pl.1.gz
-man/man1/bp_split_seq.pl.1.gz
-man/man1/bp_sreformat.pl.1.gz
-man/man1/bp_taxid4species.pl.1.gz
-man/man1/bp_taxonomy2tree.pl.1.gz
-man/man1/bp_translate_seq.pl.1.gz
-man/man1/bp_tree2pag.pl.1.gz
-man/man1/bp_unflatten_seq.pl.1.gz
+%%PERL5_MAN1%%/bp_aacomp.pl.1.gz
+%%PERL5_MAN1%%/bp_biofetch_genbank_proxy.pl.1.gz
+%%PERL5_MAN1%%/bp_bioflat_index.pl.1.gz
+%%PERL5_MAN1%%/bp_biogetseq.pl.1.gz
+%%PERL5_MAN1%%/bp_blast2tree.pl.1.gz
+%%PERL5_MAN1%%/bp_bulk_load_gff.pl.1.gz
+%%PERL5_MAN1%%/bp_chaos_plot.pl.1.gz
+%%PERL5_MAN1%%/bp_classify_hits_kingdom.pl.1.gz
+%%PERL5_MAN1%%/bp_composite_LD.pl.1.gz
+%%PERL5_MAN1%%/bp_dbsplit.pl.1.gz
+%%PERL5_MAN1%%/bp_download_query_genbank.pl.1.gz
+%%PERL5_MAN1%%/bp_extract_feature_seq.pl.1.gz
+%%PERL5_MAN1%%/bp_fast_load_gff.pl.1.gz
+%%PERL5_MAN1%%/bp_fastam9_to_table.pl.1.gz
+%%PERL5_MAN1%%/bp_fetch.pl.1.gz
+%%PERL5_MAN1%%/bp_filter_search.pl.1.gz
+%%PERL5_MAN1%%/bp_flanks.pl.1.gz
+%%PERL5_MAN1%%/bp_gccalc.pl.1.gz
+%%PERL5_MAN1%%/bp_genbank2gff.pl.1.gz
+%%PERL5_MAN1%%/bp_genbank2gff3.pl.1.gz
+%%PERL5_MAN1%%/bp_generate_histogram.pl.1.gz
+%%PERL5_MAN1%%/bp_heterogeneity_test.pl.1.gz
+%%PERL5_MAN1%%/bp_hivq.pl.1.gz
+%%PERL5_MAN1%%/bp_hmmer_to_table.pl.1.gz
+%%PERL5_MAN1%%/bp_index.pl.1.gz
+%%PERL5_MAN1%%/bp_load_gff.pl.1.gz
+%%PERL5_MAN1%%/bp_local_taxonomydb_query.pl.1.gz
+%%PERL5_MAN1%%/bp_make_mrna_protein.pl.1.gz
+%%PERL5_MAN1%%/bp_mask_by_search.pl.1.gz
+%%PERL5_MAN1%%/bp_meta_gff.pl.1.gz
+%%PERL5_MAN1%%/bp_mrtrans.pl.1.gz
+%%PERL5_MAN1%%/bp_mutate.pl.1.gz
+%%PERL5_MAN1%%/bp_netinstall.pl.1.gz
+%%PERL5_MAN1%%/bp_nexus2nh.pl.1.gz
+%%PERL5_MAN1%%/bp_nrdb.pl.1.gz
+%%PERL5_MAN1%%/bp_oligo_count.pl.1.gz
+%%PERL5_MAN1%%/bp_pairwise_kaks.pl.1.gz
+%%PERL5_MAN1%%/bp_parse_hmmsearch.pl.1.gz
+%%PERL5_MAN1%%/bp_process_gadfly.pl.1.gz
+%%PERL5_MAN1%%/bp_process_sgd.pl.1.gz
+%%PERL5_MAN1%%/bp_process_wormbase.pl.1.gz
+%%PERL5_MAN1%%/bp_query_entrez_taxa.pl.1.gz
+%%PERL5_MAN1%%/bp_remote_blast.pl.1.gz
+%%PERL5_MAN1%%/bp_revtrans-motif.pl.1.gz
+%%PERL5_MAN1%%/bp_search2BSML.pl.1.gz
+%%PERL5_MAN1%%/bp_search2alnblocks.pl.1.gz
+%%PERL5_MAN1%%/bp_search2gff.pl.1.gz
+%%PERL5_MAN1%%/bp_search2table.pl.1.gz
+%%PERL5_MAN1%%/bp_search2tribe.pl.1.gz
+%%PERL5_MAN1%%/bp_seq_length.pl.1.gz
+%%PERL5_MAN1%%/bp_seqconvert.pl.1.gz
+%%PERL5_MAN1%%/bp_seqcut.pl.1.gz
+%%PERL5_MAN1%%/bp_seqfeature_load.pl.1.gz
+%%PERL5_MAN1%%/bp_seqpart.pl.1.gz
+%%PERL5_MAN1%%/bp_seqret.pl.1.gz
+%%PERL5_MAN1%%/bp_seqretsplit.pl.1.gz
+%%PERL5_MAN1%%/bp_split_seq.pl.1.gz
+%%PERL5_MAN1%%/bp_sreformat.pl.1.gz
+%%PERL5_MAN1%%/bp_taxid4species.pl.1.gz
+%%PERL5_MAN1%%/bp_taxonomy2tree.pl.1.gz
+%%PERL5_MAN1%%/bp_translate_seq.pl.1.gz
+%%PERL5_MAN1%%/bp_tree2pag.pl.1.gz
+%%PERL5_MAN1%%/bp_unflatten_seq.pl.1.gz
 %%DATADIR%%/models/README
 %%DATADIR%%/models/biblio.dia
 %%DATADIR%%/models/bio_liveseq_variation.dia