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| author | Kyle Evans <kevans@FreeBSD.org> | 2020-08-20 21:11:43 +0000 |
|---|---|---|
| committer | Kyle Evans <kevans@FreeBSD.org> | 2020-08-20 21:11:43 +0000 |
| commit | e8608b73faaf9ccc22582392ce7163591d0ea93d (patch) | |
| tree | afbda75b32f47a6947c9bdf478ff34ed6b199eb3 /biology | |
| parent | 1082f9499725e7306ec624f20dccc65f6d726459 (diff) | |
| download | ports-e8608b73faaf9ccc22582392ce7163591d0ea93d.tar.gz ports-e8608b73faaf9ccc22582392ce7163591d0ea93d.zip | |
MFH: r545542
biology/paml: fix the build with LLVM 11
LLVM 11 switched from -fcommon to -fno-common by default. This revealed a
slight misposition of names in paml.h, which caused one symbol per enum
that's not used anywhere.
The fix just moves the names back so that the enums are named that, rather
than creating new unused symbols.
Reviewed by: zeising
Approved by: jrm (maintainer)
Approved by: ports-secteam (joneum)
Notes
Notes:
svn path=/branches/2020Q3/; revision=545561
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/paml/files/patch-src_paml.h | 14 |
1 files changed, 14 insertions, 0 deletions
diff --git a/biology/paml/files/patch-src_paml.h b/biology/paml/files/patch-src_paml.h new file mode 100644 index 000000000000..c7e35c89038f --- /dev/null +++ b/biology/paml/files/patch-src_paml.h @@ -0,0 +1,14 @@ +--- src/paml.h.orig 2020-08-20 16:14:50 UTC ++++ src/paml.h +@@ -372,9 +372,9 @@ void copySptree(void); + void printSptree(void); + + +-enum {BASEseq=0, CODONseq, AAseq, CODON2AAseq, BINARYseq, BASE5seq} SeqTypes; ++enum SeqTypes {BASEseq=0, CODONseq, AAseq, CODON2AAseq, BINARYseq, BASE5seq}; + +-enum {PrBranch=1, PrNodeNum=2, PrLabel=4, PrNodeStr=8, PrAge=16, PrOmega=32} OutTreeOptions; ++enum OutTreeOptions {PrBranch=1, PrNodeNum=2, PrLabel=4, PrNodeStr=8, PrAge=16, PrOmega=32}; + + + /* use mean (0; default) for discrete gamma instead of median (1) */ |