diff options
| author | Edwin Groothuis <edwin@FreeBSD.org> | 2002-11-04 05:46:38 +0000 |
|---|---|---|
| committer | Edwin Groothuis <edwin@FreeBSD.org> | 2002-11-04 05:46:38 +0000 |
| commit | 37f2224fa6a14520df830ae1daeba9b877daa347 (patch) | |
| tree | 13d3d367b0967ab3adcc2ce528bfe1e770b4d48e /biology | |
| parent | 3ff37e385bb15e608586b24278ba3dde9ea57151 (diff) | |
| download | ports-37f2224fa6a14520df830ae1daeba9b877daa347.tar.gz ports-37f2224fa6a14520df830ae1daeba9b877daa347.zip | |
Notes
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/deft/Makefile | 3 | ||||
| -rw-r--r-- | biology/dna-qc/Makefile | 9 | ||||
| -rw-r--r-- | biology/flip/Makefile | 4 | ||||
| -rw-r--r-- | biology/wise/Makefile | 9 |
4 files changed, 15 insertions, 10 deletions
diff --git a/biology/deft/Makefile b/biology/deft/Makefile index cda1ba957472..c8442a259b01 100644 --- a/biology/deft/Makefile +++ b/biology/deft/Makefile @@ -16,6 +16,7 @@ EXTRACT_SUFX= .tar.Z MAINTAINER= rmiya@cc.hirosaki-u.ac.jp WRKSRC= ${WRKDIR}/${DISTNAME}/source +USE_REINPLACE= yes .include <bsd.port.pre.mk> @@ -31,7 +32,7 @@ LFLAGS+= -L/usr/local/mpich/lib -lmpich .endif post-patch: - @${PERL} -pi -e "s|%%PREFIX%%|${PREFIX}|g"\ + @${REINPLACE_CMD} -e "s|%%PREFIX%%|${PREFIX}|g"\ ${WRKDIR}/${DISTNAME}/examples/DeFT .if !defined(USEMPICH) @echo "******************************" diff --git a/biology/dna-qc/Makefile b/biology/dna-qc/Makefile index 700cc1ca2122..0b2aea9b7e4a 100644 --- a/biology/dna-qc/Makefile +++ b/biology/dna-qc/Makefile @@ -15,16 +15,17 @@ EXTRACT_SUFX= .tar.Z MAINTAINER= tonym@biolateral.com.au NO_WRKSUBDIR= true +USE_REINPLACE= yes EXAMPLES= README script.compare script.limits \ bact.all chromosomeIII.all human.all worm.all PROGRAMS= counter hybridize normalize random_clip random_line post-patch: - @${PERL} -pi -e 's,^CFLAGS,#CFLAGS,' ${WRKSRC}/Makefile - @${PERL} -pi -e 's,malloc.h,stdlib.h,' ${WRKSRC}/normalize.c - @${PERL} -pi -e 's,fname\*,fname,' ${WRKSRC}/random_line.c - @${PERL} -pi -e 's,static void allocate_pool,void allocate_pool,' \ + @${REINPLACE_CMD} -e 's,^CFLAGS,#CFLAGS,' ${WRKSRC}/Makefile + @${REINPLACE_CMD} -e 's,malloc.h,stdlib.h,' ${WRKSRC}/normalize.c + @${REINPLACE_CMD} -e 's,fname\*,fname,' ${WRKSRC}/random_line.c + @${REINPLACE_CMD} -e 's,static void allocate_pool,void allocate_pool,' \ ${WRKSRC}/stringpool.c do-install: diff --git a/biology/flip/Makefile b/biology/flip/Makefile index dc48360a0059..c4ce9c456b3b 100644 --- a/biology/flip/Makefile +++ b/biology/flip/Makefile @@ -12,12 +12,14 @@ MASTER_SITES= ftp://megasun.bch.umontreal.ca/pub/flip/ MAINTAINER= tonym@biolateral.com.au +USE_REINPLACE= yes + MAN1= flip.1 # make it respect CFLAGS post-configure: - @${PERL} -pi.orig -e 's/CFLAGS=//' ${WRKSRC}/${MAKEFILE} + @${REINPLACE_CMD} -e 's/CFLAGS=//' ${WRKSRC}/${MAKEFILE} do-install: ${INSTALL_PROGRAM} ${WRKSRC}/flip ${PREFIX}/bin diff --git a/biology/wise/Makefile b/biology/wise/Makefile index 2c99524ff8c9..c7d9fad149f4 100644 --- a/biology/wise/Makefile +++ b/biology/wise/Makefile @@ -15,6 +15,7 @@ MAINTAINER= tonym@biolateral.com.au WRKTOP= ${WRKDIR}/${DISTNAME} WRKSRC= ${WRKTOP}/src +USE_REINPLACE= yes MAKEFILE= makefile # @@ -49,17 +50,17 @@ EXFILES= README db.hmm hn_est.fa human.genomic \ # post-configure: - @${PERL} -pi.orig \ + @${REINPLACE_CMD} \ -e s'#^CFLAGS = -c -O#CFLAGS ?= -c -O#;' \ -e s'#\tcsh welcome.csh##;' \ ${WRKSRC}/${MAKEFILE} - @${PERL} -pi.orig \ + @${REINPLACE_CMD} \ -e s'#CFLAGS\) $?#CFLAGS\) -c $?#;' \ ${WRKSRC}/base/${MAKEFILE} - @${PERL} -pi.orig \ + @${REINPLACE_CMD} \ -e s'#INCFLAGS\) $?#INCFLAGS\) -c $?#;' \ ${WRKSRC}/dynlibsrc/${MAKEFILE} - @${PERL} -pi.orig \ + @${REINPLACE_CMD} \ -e s'#INCFLAGS\) $?#INCFLAGS\) -c $?#;' \ -e s'#CFLAGS\) estwise.c#CFLAGS\) -c estwise.c#;' \ -e s'#CFLAGS\) estwiseb.c#CFLAGS\) -c estwiseb.c#;' \ |