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authorJoseph Mingrone <jrm@FreeBSD.org>2020-10-16 23:43:17 +0000
committerJoseph Mingrone <jrm@FreeBSD.org>2020-10-16 23:43:17 +0000
commit9c9a2cecb6f3a999ff7959b2def7cc4b14e13917 (patch)
tree2c328a0c6d9bb6eb8f0ffb2a39da470086f409bf /biology
parent0ef1308967dc4c207f667b483ca6c6ea163b57e1 (diff)
downloadports-9c9a2cecb6f3a999ff7959b2def7cc4b14e13917.tar.gz
ports-9c9a2cecb6f3a999ff7959b2def7cc4b14e13917.zip
biology/hyphy: Update to version 2.5.20
Notes
Notes: svn path=/head/; revision=552526
Diffstat (limited to 'biology')
-rw-r--r--biology/hyphy/Makefile2
-rw-r--r--biology/hyphy/distinfo6
-rw-r--r--biology/hyphy/files/patch-src_core_matrix.cpp11
3 files changed, 15 insertions, 4 deletions
diff --git a/biology/hyphy/Makefile b/biology/hyphy/Makefile
index 8ba7bd98dc92..b30bb7feae3c 100644
--- a/biology/hyphy/Makefile
+++ b/biology/hyphy/Makefile
@@ -1,7 +1,7 @@
# $FreeBSD$
PORTNAME= hyphy
-DISTVERSION= 2.5.19
+DISTVERSION= 2.5.20
CATEGORIES= biology
MAINTAINER= jrm@FreeBSD.org
diff --git a/biology/hyphy/distinfo b/biology/hyphy/distinfo
index dee8a970f64f..eefaeabbdd9c 100644
--- a/biology/hyphy/distinfo
+++ b/biology/hyphy/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1602549659
-SHA256 (veg-hyphy-2.5.19_GH0.tar.gz) = 44464c24b380aa25161639cee3ab224d9b5c29fe8079281be2bdde8f171a2e1b
-SIZE (veg-hyphy-2.5.19_GH0.tar.gz) = 5315357
+TIMESTAMP = 1602886612
+SHA256 (veg-hyphy-2.5.20_GH0.tar.gz) = 6c8e2cfbb9d61ab9d6677f3fca5ea51e729943bef213bed6d03dd0f6d6078925
+SIZE (veg-hyphy-2.5.20_GH0.tar.gz) = 5325417
diff --git a/biology/hyphy/files/patch-src_core_matrix.cpp b/biology/hyphy/files/patch-src_core_matrix.cpp
new file mode 100644
index 000000000000..31baad00d5dc
--- /dev/null
+++ b/biology/hyphy/files/patch-src_core_matrix.cpp
@@ -0,0 +1,11 @@
+--- src/core/matrix.cpp.orig 2020-10-16 23:15:05 UTC
++++ src/core/matrix.cpp
+@@ -2236,7 +2236,7 @@ bool _Matrix::IncreaseStorage (void) {
+ } else {
+ theData = (hyFloat*) MemReallocate(theData, lDim*sizeof(void*));
+ for (long i = lDim-allocationBlock; i < lDim; i++) {
+- theData [i] = ZEROPOINTER;
++ theData [i] = ZEROOBJECT;
+ }
+ }
+ } else {