diff options
| author | Joseph Mingrone <jrm@FreeBSD.org> | 2020-10-30 14:05:47 +0000 |
|---|---|---|
| committer | Joseph Mingrone <jrm@FreeBSD.org> | 2020-10-30 14:05:47 +0000 |
| commit | c0b2681b80e483deb19efca345cda0026716551d (patch) | |
| tree | b9cde551dc1925444d7211157d3e9f51907e91e1 /biology | |
| parent | 5f84508e4f9d7e596d612be2b642529fbcfce96c (diff) | |
| download | ports-c0b2681b80e483deb19efca345cda0026716551d.tar.gz ports-c0b2681b80e483deb19efca345cda0026716551d.zip | |
biology/hyphy: Update to version 2.5.21
Notes
Notes:
svn path=/head/; revision=553693
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/hyphy/Makefile | 2 | ||||
| -rw-r--r-- | biology/hyphy/distinfo | 6 | ||||
| -rw-r--r-- | biology/hyphy/files/patch-src_core_matrix.cpp | 11 | ||||
| -rw-r--r-- | biology/hyphy/pkg-plist | 2 |
4 files changed, 5 insertions, 16 deletions
diff --git a/biology/hyphy/Makefile b/biology/hyphy/Makefile index b30bb7feae3c..834b25f22cb1 100644 --- a/biology/hyphy/Makefile +++ b/biology/hyphy/Makefile @@ -1,7 +1,7 @@ # $FreeBSD$ PORTNAME= hyphy -DISTVERSION= 2.5.20 +DISTVERSION= 2.5.21 CATEGORIES= biology MAINTAINER= jrm@FreeBSD.org diff --git a/biology/hyphy/distinfo b/biology/hyphy/distinfo index eefaeabbdd9c..a4d61823161f 100644 --- a/biology/hyphy/distinfo +++ b/biology/hyphy/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1602886612 -SHA256 (veg-hyphy-2.5.20_GH0.tar.gz) = 6c8e2cfbb9d61ab9d6677f3fca5ea51e729943bef213bed6d03dd0f6d6078925 -SIZE (veg-hyphy-2.5.20_GH0.tar.gz) = 5325417 +TIMESTAMP = 1604064731 +SHA256 (veg-hyphy-2.5.21_GH0.tar.gz) = 313cd3d0c84dda72fbd801ce79dbd1da6c8e13a43c269f08de694d8d9005e5db +SIZE (veg-hyphy-2.5.21_GH0.tar.gz) = 5328307 diff --git a/biology/hyphy/files/patch-src_core_matrix.cpp b/biology/hyphy/files/patch-src_core_matrix.cpp deleted file mode 100644 index 31baad00d5dc..000000000000 --- a/biology/hyphy/files/patch-src_core_matrix.cpp +++ /dev/null @@ -1,11 +0,0 @@ ---- src/core/matrix.cpp.orig 2020-10-16 23:15:05 UTC -+++ src/core/matrix.cpp -@@ -2236,7 +2236,7 @@ bool _Matrix::IncreaseStorage (void) { - } else { - theData = (hyFloat*) MemReallocate(theData, lDim*sizeof(void*)); - for (long i = lDim-allocationBlock; i < lDim; i++) { -- theData [i] = ZEROPOINTER; -+ theData [i] = ZEROOBJECT; - } - } - } else { diff --git a/biology/hyphy/pkg-plist b/biology/hyphy/pkg-plist index c582aafc910b..4f98d2a71e13 100644 --- a/biology/hyphy/pkg-plist +++ b/biology/hyphy/pkg-plist @@ -177,11 +177,11 @@ bin/hyphy %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/BranchSiteREL.bf %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/FADE.bf %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/FEL.bf +%%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/FitMultiModel.bf %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/FUBAR.bf %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/MEME.bf %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/PRIME.bf %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/RELAX-Groups.bf -%%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/RELAX-SRV.bf %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/RELAX.bf %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/SLAC.bf %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/SingleOmega.bf |