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| author | Jung-uk Kim <jkim@FreeBSD.org> | 2019-11-26 21:46:12 +0000 |
|---|---|---|
| committer | Jung-uk Kim <jkim@FreeBSD.org> | 2019-11-26 21:46:12 +0000 |
| commit | 5a52a082347653e46a7330eb60d51230c01183ef (patch) | |
| tree | 175d5bf406b7321a3c965d241cd3f2b32e2c8ca1 /biology | |
| parent | bb21effd9b960e4613fbf599abcde1f3e655d817 (diff) | |
| download | ports-5a52a082347653e46a7330eb60d51230c01183ef.tar.gz ports-5a52a082347653e46a7330eb60d51230c01183ef.zip | |
Notes
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/artemis/Makefile | 1 | ||||
| -rw-r--r-- | biology/cytoscape/Makefile | 1 | ||||
| -rw-r--r-- | biology/jalview/Makefile | 3 | ||||
| -rw-r--r-- | biology/jalview/files/jalview.sh.in | 2 | ||||
| -rw-r--r-- | biology/trimmomatic/Makefile | 1 |
5 files changed, 2 insertions, 6 deletions
diff --git a/biology/artemis/Makefile b/biology/artemis/Makefile index 3e836b927562..79c498c7b28e 100644 --- a/biology/artemis/Makefile +++ b/biology/artemis/Makefile @@ -20,7 +20,6 @@ USE_GITHUB= yes GH_ACCOUNT= sanger-pathogens SHEBANG_FILES= act art bamview dnaplotter test/*.sh etc/go_associations.pl USE_JAVA= yes -JAVA_VERSION= 1.6+ ALL_TARGET= jar NO_ARCH= yes diff --git a/biology/cytoscape/Makefile b/biology/cytoscape/Makefile index cbca017ebc0a..7a0fa2963432 100644 --- a/biology/cytoscape/Makefile +++ b/biology/cytoscape/Makefile @@ -24,7 +24,6 @@ RUN_DEPENDS= bash:shells/bash USES= shebangfix SHEBANG_FILES= gui-distribution/assembly/src/main/bin/cytoscape.sh USE_JAVA= yes -JAVA_VERSION= 1.7+ USE_GITHUB= yes GH_TUPLE= ${PORTNAME}:${PORTNAME}-parent:${DISTVERSION}:p/parent \ ${PORTNAME}:${PORTNAME}-api:${DISTVERSION}:a/api \ diff --git a/biology/jalview/Makefile b/biology/jalview/Makefile index 19f3540e74a2..3eb8c2fbb697 100644 --- a/biology/jalview/Makefile +++ b/biology/jalview/Makefile @@ -3,7 +3,7 @@ PORTNAME= jalview PORTVERSION= 2.07 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= biology java MASTER_SITES= http://www.jalview.org/source/ DISTNAME= ${PORTNAME}_${PORTVERSION:S/./_/} @@ -12,7 +12,6 @@ MAINTAINER= ports@FreeBSD.org COMMENT= Viewer and editor for multiple sequence alignments USE_JAVA= yes -JAVA_VERSION= 1.6+ USE_ANT= yes ALL_TARGET= makejars WRKSRC= ${WRKDIR}/${PORTNAME} diff --git a/biology/jalview/files/jalview.sh.in b/biology/jalview/files/jalview.sh.in index 0444e47656ea..d14f2a8833ef 100644 --- a/biology/jalview/files/jalview.sh.in +++ b/biology/jalview/files/jalview.sh.in @@ -4,4 +4,4 @@ # Shell script to launch jalview using our javavm wrapper -JAVA_VERSION="%%JAVA_VERSION%%" "%%LOCALBASE%%/bin/java" -Djava.ext.dirs="%%DATADIR%%" -cp "%%DATADIR%%/jalview.jar" jalview.bin.Jalview +"%%LOCALBASE%%/bin/java" -Djava.ext.dirs="%%DATADIR%%" -cp "%%DATADIR%%/jalview.jar" jalview.bin.Jalview diff --git a/biology/trimmomatic/Makefile b/biology/trimmomatic/Makefile index b180fe8b3e96..ed58ce869808 100644 --- a/biology/trimmomatic/Makefile +++ b/biology/trimmomatic/Makefile @@ -16,7 +16,6 @@ LICENSE_FILE= ${WRKSRC}/LICENSE USES= zip USE_JAVA= yes -JAVA_VERSION= 1.6+ JAVA_RUN= yes NO_BUILD= yes NO_ARCH= yes |