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authorPawel Pekala <pawel@FreeBSD.org>2014-11-02 14:13:59 +0000
committerPawel Pekala <pawel@FreeBSD.org>2014-11-02 14:13:59 +0000
commit5d0682fe2b15b91c5867c96d039036f6890ceca1 (patch)
tree13ccda9f4562b38d9908483ae8982cf134ed0b9f /biology
parent3a52ddb8cb098338ee0e82e811e8f11dc722e69c (diff)
downloadports-5d0682fe2b15b91c5867c96d039036f6890ceca1.tar.gz
ports-5d0682fe2b15b91c5867c96d039036f6890ceca1.zip
Notes
Diffstat (limited to 'biology')
-rw-r--r--biology/phylip/Makefile25
-rw-r--r--biology/phylip/distinfo4
-rw-r--r--biology/phylip/pkg-descr19
3 files changed, 18 insertions, 30 deletions
diff --git a/biology/phylip/Makefile b/biology/phylip/Makefile
index d3e5590022cf..a6be9674961b 100644
--- a/biology/phylip/Makefile
+++ b/biology/phylip/Makefile
@@ -2,8 +2,7 @@
# $FreeBSD$
PORTNAME= phylip
-PORTVERSION= 3.695
-PORTREVISION= 3
+PORTVERSION= 3.696
PORTEPOCH= 1
CATEGORIES= biology
MASTER_SITES= http://evolution.gs.washington.edu/phylip/download/
@@ -11,13 +10,16 @@ MASTER_SITES= http://evolution.gs.washington.edu/phylip/download/
MAINTAINER= ports@FreeBSD.org
COMMENT= Phylogeny Inference Package
+LICENSE= BSD2CLAUSE
+LICENSE_FILES= ${WRKSRC}/COPYRIGHT
+
BUILD_DEPENDS= bash:${PORTSDIR}/shells/bash
BUILD_WRKSRC= ${WRKSRC}/src
INSTALL_WRKSRC= ${WRKSRC}/src
-USE_XORG= x11 xaw xt
USES= gmake
+USE_XORG= x11 xaw xt
MAKEFILE= Makefile.unx
MAKE_ARGS= CC="${CC}" CFLAGS="${CFLAGS} -DUNX" \
DFLAGS="${CFLAGS} -DX -I${LOCALBASE}/include" \
@@ -25,28 +27,23 @@ MAKE_ARGS= CC="${CC}" CFLAGS="${CFLAGS} -DUNX" \
USE_LDCONFIG= yes
PORTDOCS= *
-PORTEXAMPLES= *
-
-OPTIONS_DEFINE= DOCS EXAMPLES
-pre-install:
- @(cd ${WRKSRC}/src && ${STRIP_CMD} libdrawtree.so libdrawgram.so)
+OPTIONS_DEFINE= DOCS
post-install:
@cd ${WRKSRC}/exe && \
${FIND} . -maxdepth 1 -not -type d -not -name '*.jar' \
-not -name '*.unx' -not -name 'font*' -not -name '*.so' \
- -exec ${INSTALL_PROGRAM} "{}" "${STAGEDIR}${PREFIX}/bin/{}" \;
+ | ${XARGS} -J % ${INSTALL_PROGRAM} % ${STAGEDIR}${PREFIX}/bin
@cd ${WRKSRC}/exe && \
${FIND} . -maxdepth 1 -not -type d -name "*.so" \
- -exec ${INSTALL_DATA} "{}" "${STAGEDIR}${PREFIX}/lib/{}" \;
+ | ${XARGS} -J % ${INSTALL_LIB} % ${STAGEDIR}${PREFIX}/lib
@${MKDIR} ${STAGEDIR}${DATADIR}
@cd ${WRKSRC}/exe && \
${FIND} . -maxdepth 1 -not -type d -name 'font*' \
- -exec ${INSTALL_DATA} "{}" "${STAGEDIR}${DATADIR}/{}" \;
+ | ${XARGS} -J % ${INSTALL_DATA} % ${STAGEDIR}${DATADIR}
@${MKDIR} ${STAGEDIR}${DOCSDIR}
- @(cd ${WRKSRC}/doc && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR})
- @${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
- @(cd ${WRKSRC}/exe && ${COPYTREE_SHARE} testdata ${STAGEDIR}${EXAMPLESDIR})
+ @(cd ${WRKSRC}/doc && ${COPYTREE_SHARE} . \
+ ${STAGEDIR}${DOCSDIR})
.include <bsd.port.mk>
diff --git a/biology/phylip/distinfo b/biology/phylip/distinfo
index a88988aeb874..843307f3a8cd 100644
--- a/biology/phylip/distinfo
+++ b/biology/phylip/distinfo
@@ -1,2 +1,2 @@
-SHA256 (phylip-3.695.tar.gz) = d843ecee0d6bcf57f4f23dc8ef064a668907cc69b4edd7626ff7afdd8d0de370
-SIZE (phylip-3.695.tar.gz) = 4364684
+SHA256 (phylip-3.696.tar.gz) = cd0a452ca51922142ad06d585e2ef98565536a227cbd2bd47a2243af72c84a06
+SIZE (phylip-3.696.tar.gz) = 3955721
diff --git a/biology/phylip/pkg-descr b/biology/phylip/pkg-descr
index 33efe3e94f69..c6e1dd95c0a2 100644
--- a/biology/phylip/pkg-descr
+++ b/biology/phylip/pkg-descr
@@ -1,17 +1,8 @@
- PHYLIP - Phylogeny Inference Package (version 3.6)
-
PHYLIP (the PHYLogeny Inference Package) is a package of programs for
-inferring phylogenies (evolutionary trees). Methods that are
-available in the package include parsimony, distance matrix, and
-likelihood methods, including bootstrapping and consensus trees. Data
-types that can be handled include molecular sequences, gene
-frequencies, restriction sites, distance matrices, and 0/1 discrete
-characters.
-
- Joe Felsenstein
- Department of Genetics
- University of Washington
- Box 357360
- Seattle, Washington 98195-7360, U.S.A.
+inferring phylogenies (evolutionary trees). Methods that are available
+in the package include parsimony, distance matrix, and likelihood
+methods, including bootstrapping and consensus trees. Data types that
+can be handled include molecular sequences, gene frequencies,
+restriction sites, distance matrices, and 0/1 discrete characters.
WWW: http://evolution.genetics.washington.edu/phylip.html