diff options
| author | Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org> | 2016-12-18 15:25:04 +0000 |
|---|---|---|
| committer | Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org> | 2016-12-18 15:25:04 +0000 |
| commit | 99a028004e82c13204ee1c813f8ff0ff9624170c (patch) | |
| tree | db15fde4441485f5e76bad10c5e853693e7e5778 /biology | |
| parent | 377f6fdc54d686dcecf480a4d2acd64895eb4673 (diff) | |
Notes
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/Makefile | 2 | ||||
| -rw-r--r-- | biology/p5-BioPerl/Makefile (renamed from biology/p5-bioperl/Makefile) | 14 | ||||
| -rw-r--r-- | biology/p5-BioPerl/distinfo (renamed from biology/p5-bioperl/distinfo) | 0 | ||||
| -rw-r--r-- | biology/p5-BioPerl/files/patch-Bio-Root-Build.pm (renamed from biology/p5-bioperl/files/patch-Bio-Root-Build.pm) | 0 | ||||
| -rw-r--r-- | biology/p5-BioPerl/files/patch-Build.PL (renamed from biology/p5-bioperl/files/patch-Build.PL) | 0 | ||||
| -rw-r--r-- | biology/p5-BioPerl/pkg-descr (renamed from biology/p5-bioperl/pkg-descr) | 0 | ||||
| -rw-r--r-- | biology/p5-BioPerl/pkg-plist (renamed from biology/p5-bioperl/pkg-plist) | 0 |
7 files changed, 7 insertions, 9 deletions
diff --git a/biology/Makefile b/biology/Makefile index 5c09076c704a..d24068a96660 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -67,7 +67,7 @@ SUBDIR += p5-Bio-NEXUS SUBDIR += p5-Bio-Phylo SUBDIR += p5-Bio-SCF - SUBDIR += p5-bioperl + SUBDIR += p5-BioPerl SUBDIR += p5-bioperl-run SUBDIR += p5-transdecoder SUBDIR += paml diff --git a/biology/p5-bioperl/Makefile b/biology/p5-BioPerl/Makefile index 4bd62f3df343..b4d1bc17a645 100644 --- a/biology/p5-bioperl/Makefile +++ b/biology/p5-BioPerl/Makefile @@ -1,14 +1,13 @@ # Created by: Johann Visagie <johann@egenetics.com> # $FreeBSD$ -PORTNAME= bioperl +PORTNAME= BioPerl PORTVERSION= 1.6.924 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= biology perl5 MASTER_SITES= CPAN MASTER_SITE_SUBDIR= CPAN:CJFIELDS PKGNAMEPREFIX= p5- -DISTNAME= BioPerl-${PORTVERSION} MAINTAINER= perl@FreeBSD.org COMMENT= Collection of Perl modules for bioinformatics @@ -21,8 +20,8 @@ BUILD_DEPENDS= p5-Algorithm-Munkres>=0:math/p5-Algorithm-Munkres \ p5-Class-AutoClass>=0:devel/p5-Class-AutoClass \ p5-Clone>=0:devel/p5-Clone \ p5-Convert-Binary-C>=0:converters/p5-Convert-Binary-C \ - p5-Data-Stag>=0:devel/p5-Data-Stag \ p5-DBD-mysql>=0:databases/p5-DBD-mysql \ + p5-Data-Stag>=0:devel/p5-Data-Stag \ p5-Error>=0:lang/p5-Error \ p5-GD>=0:graphics/p5-GD \ p5-GD-SVG>=0:graphics/p5-GD-SVG \ @@ -30,16 +29,16 @@ BUILD_DEPENDS= p5-Algorithm-Munkres>=0:math/p5-Algorithm-Munkres \ p5-GraphViz>=0:graphics/p5-GraphViz \ p5-HTML-Parser>=0:www/p5-HTML-Parser \ p5-HTML-TableExtract>=2:www/p5-HTML-TableExtract \ - p5-IO-stringy>=0:devel/p5-IO-stringy \ p5-IO-String>=0:devel/p5-IO-String \ + p5-IO-stringy>=0:devel/p5-IO-stringy \ p5-Math-Random>=0:math/p5-Math-Random \ p5-PostScript>=0:print/p5-PostScript \ p5-SOAP-Lite>=0:net/p5-SOAP-Lite \ + p5-SVG>=0:textproc/p5-SVG \ + p5-SVG-Graph>=0:graphics/p5-SVG-Graph \ p5-Set-Scalar>=0:devel/p5-Set-Scalar \ p5-Sort-Naturally>=1:textproc/p5-Sort-Naturally \ p5-Spreadsheet-ParseExcel>=0:textproc/p5-Spreadsheet-ParseExcel \ - p5-SVG>=0:textproc/p5-SVG \ - p5-SVG-Graph>=0:graphics/p5-SVG-Graph \ p5-Test-Most>=0:devel/p5-Test-Most \ p5-Text-Shellwords>=0:textproc/p5-Text-Shellwords \ p5-Text-Tabs+Wrap>=0:textproc/p5-Text-Tabs+Wrap \ @@ -56,7 +55,6 @@ BUILD_DEPENDS= p5-Algorithm-Munkres>=0:math/p5-Algorithm-Munkres \ p5-YAML>=0:textproc/p5-YAML \ p5-libwww>=0:www/p5-libwww \ p5-libxml>=0:textproc/p5-libxml - RUN_DEPENDS:= ${BUILD_DEPENDS} USES= perl5 diff --git a/biology/p5-bioperl/distinfo b/biology/p5-BioPerl/distinfo index f8ce60817098..f8ce60817098 100644 --- a/biology/p5-bioperl/distinfo +++ b/biology/p5-BioPerl/distinfo diff --git a/biology/p5-bioperl/files/patch-Bio-Root-Build.pm b/biology/p5-BioPerl/files/patch-Bio-Root-Build.pm index b4433616c5fc..b4433616c5fc 100644 --- a/biology/p5-bioperl/files/patch-Bio-Root-Build.pm +++ b/biology/p5-BioPerl/files/patch-Bio-Root-Build.pm diff --git a/biology/p5-bioperl/files/patch-Build.PL b/biology/p5-BioPerl/files/patch-Build.PL index 4f890bf60809..4f890bf60809 100644 --- a/biology/p5-bioperl/files/patch-Build.PL +++ b/biology/p5-BioPerl/files/patch-Build.PL diff --git a/biology/p5-bioperl/pkg-descr b/biology/p5-BioPerl/pkg-descr index a993ffada2fe..a993ffada2fe 100644 --- a/biology/p5-bioperl/pkg-descr +++ b/biology/p5-BioPerl/pkg-descr diff --git a/biology/p5-bioperl/pkg-plist b/biology/p5-BioPerl/pkg-plist index 4f532432a681..4f532432a681 100644 --- a/biology/p5-bioperl/pkg-plist +++ b/biology/p5-BioPerl/pkg-plist |