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| author | Alexey Dokuchaev <danfe@FreeBSD.org> | 2021-03-23 14:20:49 +0000 |
|---|---|---|
| committer | Alexey Dokuchaev <danfe@FreeBSD.org> | 2021-03-23 14:20:49 +0000 |
| commit | 2ed87b8454f644ab7ac2b4589dfbd62e7dd04d5d (patch) | |
| tree | 08c88c979790954ecb736acba45b230709d5dc02 /biology | |
| parent | 03f562f1b182d64536c4d1f51fe3b80763a7a5fd (diff) | |
| download | ports-2ed87b8454f644ab7ac2b4589dfbd62e7dd04d5d.tar.gz ports-2ed87b8454f644ab7ac2b4589dfbd62e7dd04d5d.zip | |
Notes
Diffstat (limited to 'biology')
5 files changed, 8 insertions, 28 deletions
diff --git a/biology/ugene/Makefile b/biology/ugene/Makefile index 68f125965abe..fc71d7f3537f 100644 --- a/biology/ugene/Makefile +++ b/biology/ugene/Makefile @@ -2,11 +2,11 @@ # $FreeBSD$ PORTNAME= ugene -PORTVERSION= 37.0 +PORTVERSION= 38.0 CATEGORIES= biology science MAINTAINER= h2+fbsdports@fsfe.org -COMMENT= Free, open-source, cross-platform bioinformatics toolkit +COMMENT= Integrated bioinformatics toolkit LICENSE= GPLv2+ LICENSE_FILE= ${WRKSRC}/LICENSE.txt @@ -19,7 +19,7 @@ RUN_DEPENDS= bash:shells/bash USE_GITHUB= yes GH_ACCOUNT= ugeneunipro -USES= desktop-file-utils gl qmake qt:5 shared-mime-info xorg +USES= desktop-file-utils gl qmake qt:5 shared-mime-info sqlite xorg USE_GL= gl glu USE_QT= buildtools_build linguisttools_build \ core gui network opengl printsupport scripttools script \ @@ -29,7 +29,8 @@ USE_XORG= x11 xtst QMAKE_ARGS= INSTALL_PREFIX="${PREFIX}" UGENE_INSTALL_DATA="${DATADIR}" \ INSTALL_MANDIR="${MAN1PREFIX}/man" \ - UGENE_LRELEASE="${LRELEASE}" UGENE_LUPDATE="${LUPDATE}" + UGENE_LRELEASE="${LRELEASE}" UGENE_LUPDATE="${LUPDATE}" \ + UGENE_USE_BUNDLED_SQLITE=0 ALL_TARGET= release CXXFLAGS_i386= -msse2 diff --git a/biology/ugene/distinfo b/biology/ugene/distinfo index c7bd13ca8c25..5265749cd4bf 100644 --- a/biology/ugene/distinfo +++ b/biology/ugene/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1607974687 -SHA256 (ugeneunipro-ugene-37.0_GH0.tar.gz) = c953a1465d766168d1f753cd6757f1333baf07b5c9b60f4de798ef549e059ae4 -SIZE (ugeneunipro-ugene-37.0_GH0.tar.gz) = 23379406 +TIMESTAMP = 1616417068 +SHA256 (ugeneunipro-ugene-38.0_GH0.tar.gz) = e0eb0ccf02e43bef4dfba707fb25b94e2d77476fcfef853ab7d7222f44fffa92 +SIZE (ugeneunipro-ugene-38.0_GH0.tar.gz) = 23448730 diff --git a/biology/ugene/files/patch-src_corelibs_U2View_src_ov__sequence_Overview.cpp b/biology/ugene/files/patch-src_corelibs_U2View_src_ov__sequence_Overview.cpp deleted file mode 100644 index fdf95dc9edc6..000000000000 --- a/biology/ugene/files/patch-src_corelibs_U2View_src_ov__sequence_Overview.cpp +++ /dev/null @@ -1,10 +0,0 @@ ---- src/corelibs/U2View/src/ov_sequence/Overview.cpp.orig 2020-05-18 18:59:02 UTC -+++ src/corelibs/U2View/src/ov_sequence/Overview.cpp -@@ -38,6 +38,7 @@ - - #include <QToolTip> - #include <QVBoxLayout> -+#include <QPainterPath> - - #include <U2Core/AnnotationModification.h> - #include <U2Core/AnnotationSettings.h> diff --git a/biology/ugene/files/patch-src_corelibs_U2View_src_ov__sequence_view__rendering_SequenceViewAnnotatedRenderer.cpp b/biology/ugene/files/patch-src_corelibs_U2View_src_ov__sequence_view__rendering_SequenceViewAnnotatedRenderer.cpp deleted file mode 100644 index 8b55af59969f..000000000000 --- a/biology/ugene/files/patch-src_corelibs_U2View_src_ov__sequence_view__rendering_SequenceViewAnnotatedRenderer.cpp +++ /dev/null @@ -1,10 +0,0 @@ ---- src/corelibs/U2View/src/ov_sequence/view_rendering/SequenceViewAnnotatedRenderer.cpp.orig 2020-05-18 19:03:19 UTC -+++ src/corelibs/U2View/src/ov_sequence/view_rendering/SequenceViewAnnotatedRenderer.cpp -@@ -31,6 +31,7 @@ - - #include <U2View/ADVSequenceObjectContext.h> - #include <U2View/SequenceObjectContext.h> -+#include <QPainterPath> - - - namespace U2 { diff --git a/biology/ugene/pkg-plist b/biology/ugene/pkg-plist index e23aedc80e1e..eb0a6e5bb047 100644 --- a/biology/ugene/pkg-plist +++ b/biology/ugene/pkg-plist @@ -10,7 +10,6 @@ lib/ugene/libU2Private.so lib/ugene/libU2Script.so lib/ugene/libU2Test.so lib/ugene/libU2View.so -lib/ugene/libugenedb.so lib/ugene/plugins/CoreTests.license lib/ugene/plugins/CoreTests.plugin lib/ugene/plugins/GUITestBase.license |